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aryarm / as_analysis

A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
MIT License
10 stars 9 forks source link

download WASP for the user #44

Closed aryarm closed 6 years ago

aryarm commented 6 years ago

The pipeline could attempt to download and install WASP if the user hasn't specified a WASP directory. This might be especially good given that all of WASP's dependencies are listed already as dependencies of ours. It might be a nice addition. Think about it.

Another benefit is that it will prevent problems where the version of hdf5 used to compile a library is different from the version that is used to run snp2h5.

aryarm commented 6 years ago

perhaps this would be best served as its own rule instead of as some external python code so that snakemake can handle when it happens but that might require listing the wasp dir (or its scripts) as input? which may or may not be desirable. think about this some more