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aryarm / as_analysis

A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
MIT License
10 stars 9 forks source link

consider extracting common rules to separate snakefile #48

Closed aryarm closed 4 years ago

aryarm commented 6 years ago

both Snakefile-counts and Snakefile-WASP need four rules for downloading and installing WASP, splitting VCFs by chromosome, and running snp2h5 it might be cleaner and more simple to extract these rules to their own snakefile and then include it in the other Snakefiles