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aryarm / as_analysis

A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
MIT License
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allow for linking samples from a terra bucket #57

Open aryarm opened 4 years ago

aryarm commented 4 years ago

instead of requiring that the user copy the gtex data to their own bucket, we could just get it for them automatically

aryarm commented 4 years ago

the one problem that I see with this is that the terra bucket is a requester pays bucket hopefully, GS() can handle that?

aryarm commented 3 years ago

Thanks to @delagoya for doing the research on this! snakemake added support for requester-pays buckets here

the syntax is GS.remote(<url>, user_project=<project>)

update 2/4: @AprilJack tried this, but it didn't work for some reason