The extract_gq_scores rule extracts GQ information from a VCF for every sample. Before we run this step, we could extract just the GQ information from the VCF. And then extract it for each sample, separately.
This will likely speed up the execution of extract_gq_scores and reduce the disk space needed for execution of the rule on the cloud
The
extract_gq_scoresrule extracts GQ information from a VCF for every sample. Before we run this step, we could extract just the GQ information from the VCF. And then extract it for each sample, separately. This will likely speed up the execution ofextract_gq_scoresand reduce the disk space needed for execution of the rule on the cloud