Closed aryarm closed 3 years ago
add an option to the pipeline for this?
the GQ is used by the allelic imbalance test as a prior that the genotype is incorrect, but GQ = 20 (ie a genotyping error of 0.01) is a reasonably conservative assumption
add an option to the pipeline for this?
the GQ is used by the allelic imbalance test as a prior that the genotype is incorrect, but GQ = 20 (ie a genotyping error of 0.01) is a reasonably conservative assumption