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aryarm / as_analysis

A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
MIT License
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add error messages for dataframes with 0 rows after filtering #68

Open zrcjessica opened 3 years ago

zrcjessica commented 3 years ago

Add error messages to R scripts where dataframes are empty after filtering

aryarm commented 3 years ago

and perhaps we should also exit gracefully somehow within Snakemake? currently, I've just been using Snakemake's -k parameter to tell it to ignore the exit code 1s and keep going