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aryeelab
/
DNAlandscapeR
Shiny app that integrates ChIA-PET and other epigenetic tracks
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Imported HiC .tgz files created by HiCPro2DNAlandscapeR fail
#26
bioinformike
opened
4 years ago
0
Set check_region to False for get_bucket function.
#25
bioinformike
closed
5 years ago
1
Dockerfile doesn't work with rocker/shiny:latest
#24
ernstki
opened
5 years ago
0
Save RDS of Plot
#23
caleblareau
opened
7 years ago
0
The screen greys with "Disconnected from the server" immediately upon connection
#22
martinaryee
closed
7 years ago
2
Navigating the browser left or right changes zoom level
#21
martinaryee
closed
8 years ago
2
pull data from bigwigs without `chr` in the the seqname
#20
caleblareau
closed
7 years ago
1
[Feature Request] Ability to save/bookmark browser state
#19
martinaryee
opened
8 years ago
2
Inf values in bigwig causes `Error: need finite 'ylim' values`
#18
martinaryee
closed
8 years ago
4
merge branches
#17
caleblareau
closed
8 years ago
0
Added Hi-C quantiles; dedicated ChIA-PET window; rewrote guide; moved…
#16
caleblareau
closed
8 years ago
0
[Feature Request] Handle commas in genome coordinates
#15
martinaryee
closed
8 years ago
1
[Feature Request] +/- stranded track plotting
#14
caleblareau
opened
8 years ago
0
[Feature Request] Differential Hi-C Track
#13
caleblareau
closed
7 years ago
0
Add max/min and/or percentiles for Hi-C color intensities
#12
caleblareau
closed
8 years ago
2
Download custom plot fails with "GhostScript was not found" (Docker)
#11
martinaryee
closed
8 years ago
2
New feature: Ability to download the visualized ChIA-PET loops
#10
martinaryee
closed
8 years ago
2
Show anchor width
#9
martinaryee
closed
8 years ago
1
Plot gene bodies only
#8
caleblareau
closed
8 years ago
1
Smoothing?
#7
caleblareau
closed
8 years ago
1
Uploading files
#6
caleblareau
closed
8 years ago
1
Server timeout
#5
caleblareau
closed
8 years ago
1
Gene annotation
#4
caleblareau
closed
8 years ago
1
Bumphunter methylation plot
#3
caleblareau
closed
8 years ago
1
Displaying loops with only one anchor in region
#2
caleblareau
closed
8 years ago
2
Loop widths
#1
caleblareau
closed
8 years ago
1