Error in pip install -r requirements.txt

[robyn-ball]

Fixed: I was able to complete it by using

sudo pip install -r requirements.txt

Original: I'm getting a permissions error when I try to install all the dependencies. I have downloaded and installed Python 2.7, bwa, bedtools, and pip. I tried changing the permissions for this folder with chmod -R but was unable to do so.

Below is the error. Any help is greatly appreciated.

q/_StepVector.so running build_scripts creating build/scripts-2.7 copying and adjusting scripts/htseq-qa -> build/scripts-2.7 copying and adjusting scripts/htseq-count -> build/scripts-2.7 changing mode of build/scripts-2.7/htseq-qa from 644 to 755 changing mode of build/scripts-2.7/htseq-count from 644 to 755 running install_lib creating /Library/Python/2.7/site-packages/HTSeq error: could not create '/Library/Python/2.7/site-packages/HTSeq': Permission denied

----------------------------------------

Command "/usr/bin/python -u -c "import setuptools, tokenize;file='/private/var/folders/_6/jzln984x4x52zfrzq4rxw3jc0000gn/T/pip-build-1KKOsn/HTSeq/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /var/folders/_6/jzln984x4x52zfrzq4rxw3jc0000gn/T/pip-lM1aws-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/_6/jzln984x4x52zfrzq4rxw3jc0000gn/T/pip-build-1KKOsn/HTSeq/

[vedtopkar]

Hi Robyn,

Glad to hear that you got it working!

Best, Ved

[robyn-ball]

Thanks for getting back to me!

On Tue, Jan 17, 2017 at 5:22 PM, Ved Topkar notifications@github.com wrote:

Hi Robyn,

Glad to hear that you got it working!

Best, Ved

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/aryeelab/guideseq/issues/33#issuecomment-273354452, or mute the thread https://github.com/notifications/unsubscribe-auth/AH3fB6Ng0xYX8z20BY-oqFqJAf-RXV9wks5rTWllgaJpZM4LmLlj .