Links in large_test.sh are "dead"

[JoeEmendo]

The below link from the "large_test.sh" is no longer working, is it possible to re-activate or provide a new link for those of us who'd like to test the large dataset? Thanks!

wget http://aryee.mgh.harvard.edu/guideseq/data/guideseq_test_fastq.zip

EDIT:

A temporary work-around for anyone following this thread is to download from the SRR dataset. I believe you can get this with the below cmd, if you have NCBI CLI tools installed. Although these are only the read fastq files and not the indexes...

fastq-dump SRR1695633 -split-files -O /OUTPUT/DIRECTORY

[martinaryee]

Thanks for reporting this. We'll get the link fixed and back up. I'll post an update here.

[JoeEmendo]

Sorry to be annoying, but any update on this? Thanks.

[poppn]

Again, commenting looking for an update. Thanks.

[martinaryee]

We're having trouble getting the web server (and the test data it hosts) back up. We're going to regenerate the dataset. Thanks for your patience and sorry for the hassle!

[martinaryee]

We have uploaded the test data here: https://storage.googleapis.com/aryeelab/guideseq/guideseq_test_fastq.zip

Could you try this link and let us know if you have any trouble?

[JoeEmendo]

Thanks. Here is what I get after unzip. Perhaps unnecessary, but can you include md5? I downloaded with wget to aws eu-west-1 in 40s, if that matters to you.

total 5.3G
-rw-rw---- 1 joe users 120M Oct 14  2015 Undetermined_S0_L001_I1_001.fastq.gz
-rw-rw---- 1 joe users 221M Oct 14  2015 Undetermined_S0_L001_I2_001.fastq.gz
-rw-rw---- 1 joe users 1.1G Oct 14  2015 Undetermined_S0_L001_R1_001.fastq.gz
-rw-rw---- 1 joe users 1.3G Oct 14  2015 Undetermined_S0_L001_R2_001.fastq.gz
-rw-r----- 1 joe users 1.1K Nov 17  2015 test_manifest.yaml

[martinaryee]

I'm closing this issue. Please let us know if anyone is still having trouble.