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aryeelab / guideseq

Analysis pipeline for the GUIDE-seq assay.
GNU Affero General Public License v3.0
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How to combine multiple samples into one MERGED group in test_manifest.yaml #74

Open qicheng-ma opened 4 months ago

qicheng-ma commented 4 months ago

Dear Author,

In the file test_manifest.yaml:

undemultiplexed: forward: test/data/undemultiplexed/undemux.r1.fastq.gz reverse: test/data/undemultiplexed/undemux.r2.fastq.gz index1: test/data/undemultiplexed/undemux.i1.fastq.gz index2: test/data/undemultiplexed/undemux.i2.fastq.gz

samples: control: target: barcode1: CTCTCTAC barcode2: CTCTCTAT description: Control

EMX1:
    target: GAGTCCGAGCAGAAGAAGAANGG
    barcode1: TAGGCATG
    barcode2: TAGATCGC
    description: EMX_site1

we can only compare one sample to another sample, could you please tell me how to combine multiple samples into one MERGED group in test_manifest.yaml so that I can compare one group to another group ?

Thanks!