aryeelab / guideseq

Analysis pipeline for the GUIDE-seq assay.
GNU Affero General Public License v3.0
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400mb of .Sam but no off target #76

Open piailmitico opened 1 week ago

piailmitico commented 1 week ago

For the control sample, so not treated, I run the pipeline until the mapping, resulting in a .Sam file of 400mb. Then, I do the off-target site candidates entering under - -target_sequence and empty string (“”), as reported in the instruction. However, the resulting .txt is empty…could that be? Any idea.