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aryeelab
/
guideseq
Analysis pipeline for the GUIDE-seq assay.
GNU Affero General Public License v3.0
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How to generate index FASTQ files?
#28
xueweireally
opened
8 years ago
4
Updated for compliance with pep8
#27
vedtopkar
closed
8 years ago
1
Updated for compliance with pep8
#26
vedtopkar
closed
8 years ago
4
Updated README flowchart image.
#25
martinaryee
closed
8 years ago
0
Candidate 1.0 release
#24
martinaryee
closed
8 years ago
0
Site visualization functionality
#23
vedtopkar
closed
8 years ago
0
Site visualization functionality
#22
vedtopkar
closed
8 years ago
0
Add ReverseComplementIndexRead2 option
#21
shengdar
closed
8 years ago
2
Manifest validation
#20
vedtopkar
closed
8 years ago
2
filterBackgroundSites.py doesn't respect the bedtools path from the YAML
#19
martinaryee
closed
8 years ago
1
Full pipeline test
#18
vedtopkar
closed
8 years ago
0
Automatically strip whitespace from YAML input
#17
vedtopkar
closed
8 years ago
1
Test dataset for guideseq package
#16
shengdar
closed
8 years ago
3
Add optional parameters to manifest for greater flexibility
#15
vedtopkar
opened
8 years ago
0
Full PEP8 Compliance
#14
vedtopkar
closed
8 years ago
1
Add ability to specify multiple backgrounds to filter out
#13
vedtopkar
opened
8 years ago
0
Additional code commenting for clarity
#12
martinaryee
opened
8 years ago
0
Make real test dataset available
#11
martinaryee
closed
8 years ago
7
Geneious-like offtarget plots
#10
vedtopkar
closed
8 years ago
1
Implement the ability to run individual pipeline steps
#9
martinaryee
closed
8 years ago
1
Tests for filterBackgroundSites.py
#8
vedtopkar
closed
8 years ago
1
Tests for identifyOfftargets.py
#7
vedtopkar
closed
8 years ago
1
Discovery Plots for each cleavage site
#6
vedtopkar
opened
8 years ago
0
In/Del visualization for each offtarget
#5
vedtopkar
opened
8 years ago
0
Background filtering implementation
#4
shengdar
opened
8 years ago
3
Simplify manifest
#3
martinaryee
closed
8 years ago
3
Add manifest validation
#2
vedtopkar
closed
8 years ago
1
Manifest should specify barcode1 and barcode2 separately
#1
martinaryee
closed
8 years ago
3
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