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aryeelab / hichipper

A preprocessing and QC pipeline for HiChIP data
MIT License
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REpairs file #14

Closed caleblareau closed 7 years ago

caleblareau commented 7 years ago

https://github.com/aryeelab/hichipper/blob/master/hichipper/cli.py#L108-L120

In HiC-Pro 2.7.8, a .REpairs file is generated, invalidating test hic2. Can correct a couple of different ways-- potentially just changing the modulo arm. to include both 5 and 6.

caleblareau commented 7 years ago

@areyesq89 commit to the fileNull branch 255d3e2b8291deb8ee2706566f3fd6ece9448758 and subsequent pull request 35bc78c10016249dd5e8437b1e1e4a3b0e648c65 solved this issue using a regular expression construct.