search

aryeelab / hichipper

A preprocessing and QC pipeline for HiChIP data
MIT License
33 stars 12 forks source link

Warning messages in QC report generation #25

Closed 0xaf1f closed 7 years ago

0xaf1f commented 7 years ago

I installed hichipper on our cluster and ran the example as follows:

cp -r /path/to/hichipper/tests .
cd tests
hichipper --out output1 yaml/one.yaml

and the run appears to complete successfully, but the last thing printed is this:

Output created: output1.hichipper.qcreport.html
Warning messages:
1: Transformation introduced infinite values in continuous x-axis
2: Removed 13419 rows containing non-finite values (stat_bin).
Processing: d1

Is that an expected/ignorable warning for this example run?

caleblareau commented 7 years ago

Hi @0xaf1f -- Yes the warning messages are just that-- warnings. These are coming from drawing the histogram of the loop length values, and are expected. I'll leave this as a reminder to suppress these warning messages in future updates

caleblareau commented 7 years ago

These are now supressed in v0.7.1