Add option to keep temporary files

aryeelab / hichipper

A preprocessing and QC pipeline for HiChIP data

MIT License

33 stars 12 forks source link

Add option to keep temporary files #42

Closed afrendeiro closed 6 years ago

afrendeiro commented 6 years ago

Thanks for developing the software! Would be nice to have an option not to remove temporary files - especially the R scripts. This would help debugging during the first runs.

caleblareau commented 6 years ago

Thanks @afrendeiro

This actually does exist already... see http://hichipper.readthedocs.io/en/latest/content/Configuration.html

--keep-temp-files

afrendeiro commented 6 years ago

Ah, my bad I could swear it wasn't there. Thanks anyway!

caleblareau commented 6 years ago

no problem! it's been known to happen to me as well :)