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aryeelab / hichipper

A preprocessing and QC pipeline for HiChIP data
MIT License
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inputting bam file - 'one.filt.intra.loop_counts.bedpe' does not exist in current working directory #48

Open armenabnousi opened 6 years ago

armenabnousi commented 6 years ago

hi, is the --input-bam parameter supported now? It's not in the documentation online but shows in the hichipper help. When I tried running it says "Not fully supported yet! Processing: one" followed by an error "one.filt.intra.loop_counts.bedpe' does not exist in current working directory". Is this because the option for bam input is not supported yet or it's from my run. Thanks!

caleblareau commented 6 years ago

Hey Armen,

Still in progress but will update you when it’s completed… hopefully soon.

On Jul 5, 2018, at 10:59 AM, Armen Abnousi notifications@github.com wrote:

hi, is the --input-bam parameter supported now? It's not in the documentation online but shows in the hichipper help. When I tried running it says "Not fully supported yet! Processing: one" followed by an error "one.filt.intra.loop_counts.bedpe' does not exist in current working directory". Is this because the option for bam input is not supported yet or it's from my run. Thanks!

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