Integration of replicates for HiChIP data

aryeelab / hichipper

A preprocessing and QC pipeline for HiChIP data

MIT License

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Integration of replicates for HiChIP data #61

Open yhx-tj opened 6 years ago

yhx-tj commented 6 years ago

Hi,

I have been using hichipper to analysis H3K27ac HiChIP data in K562 cell line, consisted of 3 replicates. How to examine the correlation between replicates and combine the loop calling results together? Should I simply merge bam files and then rerun the HiC-Pro pipeline or combine the final results?

Thanks!