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arzwa / wgd

Python package and CLI for whole-genome duplication related analyses. This package is deprecated in favor of https://github.com/heche-psb/wgd.
http://wgd.readthedocs.io/en/latest/
GNU General Public License v3.0
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Error during ksd with some gene families #29

Closed igigkuo closed 4 years ago

igigkuo commented 4 years ago

Hi,

I am calculating ks with "wgd ksd". I really enjoy using wgd, and the whole process went well with most datasets, but in some cases, the program first went well and then stopped with an error report for a particular gene family, and it seems to be related to the failure of creating the Ks file.

The input files and the error report are here: test.zip

My command is: wgd ksd -n 10 Bo.Bo.homo Bo.Bo.cds

I would be grateful if you can help me with this error. Many thanks to your help!

arzwa commented 4 years ago

Hi, I think this is due to a bug that is already fixed in the latest wgd version on the master branch. From the error report it seems you are not using that latest version (my bad, I should have tagged a new release, which I did now - see release v1.1.1). Please install the latest version and check if you still have issues.

igigkuo commented 4 years ago

The problem is solved with the new version!! That's great!!! Thanks a lot!