Singularity I-ADHoRe not working

arzwa / wgd

Python package and CLI for whole-genome duplication related analyses. This package is deprecated in favor of https://github.com/heche-psb/wgd.

http://wgd.readthedocs.io/en/latest/

GNU General Public License v3.0

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Singularity I-ADHoRe not working #42

Closed pedrobdfp closed 3 years ago

pedrobdfp commented 3 years ago

I am using WGD on an insect genome, and I have been using the singularity container within a Centos 7 Virtual Machine. I was following the basic tutorials, but I came across an error on the third command line (singularity exec wgd.simg wgd syn):

ERROR i-adhora executable not found! ERROR Could not run all software, exit here.

I believe this is an error with the container instalation?

best; Pedro

arzwa commented 3 years ago

Hi Pedro, I-ADHoRe is currently not available in the container installation. The software used to be unavailable for non-interactive download on the net, however currently it is (https://github.com/VIB-PSB/i-ADHoRe/issues), so I might update the container in the future to also support synteny inference with I-ADHoRe.

Cecilia-Sensalari commented 2 years ago

Hi, Singularity has been updated, now it can run i-ADHoRe (see README).

Cheers, Cecilia