compute a Ks distribution error

arzwa / wgd

Python package and CLI for whole-genome duplication related analyses. This package is deprecated in favor of https://github.com/heche-psb/wgd.

http://wgd.readthedocs.io/en/latest/

GNU General Public License v3.0

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compute a Ks distribution error #51

Open bigboom1 opened 3 years ago

bigboom1 commented 3 years ago

Hello, I am running the code in the example file during the test software installation.when I run the code :wgd ksd sample.mcl sample.fasta,an error happened. wgd越界

I hope you can reply me when you see it. Thank you

arzwa commented 3 years ago

If you are using a random sample as in the example, you might have run in an unlucky situation where you have some empty alignment (well it seems like that...). I should capture those errors, but could you perhaps try again with a different sample? If the problem persists I would need the data, because at the moment I can not reproduce the issue.

munegowda commented 1 year ago

Hi @arzwa, I am using wgd-1.1.2. and I also get the same error when running wgd ksd. Please see the attached log file. wgd_ksd_log.txt