Open smallfishcui opened 3 years ago
Sorry, I haven't used Singularity containers in two years, so I have a look whether I can update this. For sure dmd
won't work, because the container doesn't include a diamond installation currently. For the error you note above, are you using the commands in the form singularity exec wgd.simg wgd <command>
?
Hi, Thank you for the information. Does it run if I have diamond in the PaTH? Yes I run it like that. The help menu runs fine, and then it brokes when running real data.
Cui
On Sat 6. Feb 2021 at 17.13, Arthur Zwaenepoel notifications@github.com wrote:
Sorry, I haven't used Singularity containers in two years, so I have a look whether I can update this. For sure dmd won't work, because the container doesn't include a diamond installation currently. For the error you note above, are you using the commands in the form singularity exec wgd.simg wgd
? — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/arzwa/wgd/issues/56#issuecomment-774491867, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJZNAZNDXLDUQWGIMRMII3DS5VMBNANCNFSM4XDQQTKA .
Hi, There has been an update with Singularity, now it supports diamond and it can print the version (see README).
Cheers, Cecilia
Hi,
I installed the singularity container on a server, and the function --version, and dmd doesn't work. ALso when I try to run mcl analysis, it constantly complains cds file can't be find, or the input folder is read-only, system error.
Can you help with that?
Thanks, Cui