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arzwa / wgd

Python package and CLI for whole-genome duplication related analyses. This package is deprecated in favor of https://github.com/heche-psb/wgd.
http://wgd.readthedocs.io/en/latest/
GNU General Public License v3.0
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Visualization #70

Closed ardy20 closed 2 years ago

ardy20 commented 2 years ago

Hi In stalled wgd in HPC system using conda. But I was not able to run the visualization step. the command below did not pop up the bowser to view the results:

bokeh serve & Then run wgd viz -i ./ks_dir

Is there any alternative or web-based tool to view when the tool has not been installed in a local computer (but instaled on a High performance Computers or clusters)?

Regards

arzwa commented 2 years ago

There is no web-based tool at the present to do so. You can try to fix the issue with your system admin, install wgd locally and run the viz command locally, visualize the Ks distributions non-interactively or use some other environment to conduct the visualization yourself (e.g. #24 for some hints on using R). Note that the interactive visualization is not actively maintained.