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asalt / bcm-gsea

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change "order of operations" #4

Closed asalt closed 2 months ago

asalt commented 2 months ago

right now the pipeline is fixed to : load -> fetch all gene sets for all ranks -> gsea -> produce all plots for all ranks for all genesets.

but this can be very slow and if there's a crash all following geneset analyses will fail

better to be able to break this up on a per-geneset collection basis

will require reorganizing run.R

may be easier to do so after more robust parameter validation is in place https://github.com/asalt/bcm-gsea/issues/3#issue-2489736790

asalt commented 2 months ago

finished as of 4e42489cba6444bc77ec8ea2190962d696fa8b5e