aschampion / diluvian

Flood filling networks for segmenting electron microscopy of neural tissue
MIT License
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ImageStackVolumes #20

Closed pattonw closed 5 years ago

pattonw commented 5 years ago

Added from_toml() to allow creation of volumes from config files.

Added a test for image stacks.

Added a translation term to better match CATMAID image stack volumes.

Added a mask_data term since it is expected by PartitionedVolumes.

Renamed coordinate systems to better match behavior of other volumes. World coordinates seem to generally mean pixel coordinates, so I kept that the same and added "real" for nanometer resolution coordinates.

Fixed coordinate transforms to perform as expected in the test.