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ash211 / gtfold

GTfold is a fast, scalable multicore code for predicting RNA secondary structure and is one to two orders of magnitude faster than the de facto standard programs and achieves comparable accuracy of prediction.
http://gtfold.sourceforge.net/
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k=0 in constraints file should be invalid #8

Closed spoznan closed 13 years ago

spoznan commented 13 years ago

Write now, gtfold doesn't say that a constraint of type

F i j 0 (e.g. F 3 10 0)

is invalid. It seems that it just ignores it when it folds, but we think it should report it as an invalid option and exit.

ash211 commented 13 years ago

Fixed in commit 62964e950ecd1a75b7b4f04e703daf0c2181fd54

https://github.com/ash211/gtfold/commit/62964e950ecd1a75b7b4f04e703daf0c2181fd54