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ashakru / BilbORF

R package for performing differential ORF usage analysis
MIT License
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Function assigning ORF status depending on the isoform #4

Closed ashakru closed 1 year ago

ashakru commented 1 year ago

Input: Transcript annotations generated by prepare_annotations_fromGTF() and BED file with start and stop position of an ORF

Output: returns a table paired with Granges object containing spliced genomic coordinates of ORF-isoform pairs, reports ORF status on all overlapping transcripts