Open ashakru opened 12 months ago
Currently there is a problem with setting appropriate input for ORFik::kozakSequenceScore
. The error is:
Error in pmapToTranscriptF(grl, reference, ignore.strand = ignore.strand, :
subscript contains out-of-bounds indices
And it comes from startRegion()
and further windowPerGroup()
function. I tried to play with setting names within the GRangesLists with ORFs and respective transcripts coordinates, but it didn't work.
Add a column to the table output of
annotate_orf_isoforms
with the Kozak sequence score computed. Likely to useORFik::kozakSequenceScore