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ashander / ftprime

Forward-time simulation of the msprime data structure (for development)
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document simupop usage #32

Closed petrelharp closed 7 years ago

petrelharp commented 7 years ago

Steps are

  1. initialize population
  2. initialize and apply id tagger
  3. output from recombinator
  4. collect locations and add samples
  5. write out samples table
  6. extract tree sequence
  7. simplify
  8. add mutation
  9. load mutations and write out vcf or whatevs
petrelharp commented 7 years ago

More or less addressed by 55ce67d (but one more thing to keep up to date, grr).