NERSequenceDemo trunk version fails

[GoogleCodeExporter]

NERSequenceDemo trunk version fails with the following error:

Couldn't open cc.mallet.util.MalletLogger resources/logging.properties file.
 Perhaps the 'resources' directories weren't copied into the 'class' directory.
 Continuing.
Exception in thread "main" 
de.tudarmstadt.ukp.dkpro.lab.engine.ExecutionException: 
de.tudarmstadt.ukp.dkpro.lab.engine.ExecutionException: 
de.tudarmstadt.ukp.dkpro.lab.engine.ExecutionException: 
java.lang.NoClassDefFoundError: gnu/trove/TObjectIntHashMap
    at de.tudarmstadt.ukp.dkpro.lab.engine.impl.ExecutableTaskEngine.run(ExecutableTaskEngine.java:68)
    at de.tudarmstadt.ukp.dkpro.lab.engine.impl.DefaultTaskExecutionService.run(DefaultTaskExecutionService.java:48)
    at de.tudarmstadt.ukp.dkpro.lab.Lab.run(Lab.java:97)
    at de.tudarmstadt.ukp.dkpro.tc.examples.single.sequence.NERSequenceDemo.runCrossValidation(NERSequenceDemo.java:78)
    at de.tudarmstadt.ukp.dkpro.tc.examples.single.sequence.NERSequenceDemo.main(NERSequenceDemo.java:63)
Caused by: de.tudarmstadt.ukp.dkpro.lab.engine.ExecutionException: 
de.tudarmstadt.ukp.dkpro.lab.engine.ExecutionException: 
java.lang.NoClassDefFoundError: gnu/trove/TObjectIntHashMap
    at de.tudarmstadt.ukp.dkpro.lab.engine.impl.ExecutableTaskEngine.run(ExecutableTaskEngine.java:68)
    at de.tudarmstadt.ukp.dkpro.lab.task.impl.BatchTask.runNewExecution(BatchTask.java:350)
    at de.tudarmstadt.ukp.dkpro.lab.task.impl.BatchTask.executeConfiguration(BatchTask.java:255)
    at de.tudarmstadt.ukp.dkpro.lab.task.impl.BatchTask.execute(BatchTask.java:185)
    at de.tudarmstadt.ukp.dkpro.tc.mallet.task.BatchTaskCrossValidation.execute(BatchTaskCrossValidation.java:226)
    at de.tudarmstadt.ukp.dkpro.lab.engine.impl.ExecutableTaskEngine.run(ExecutableTaskEngine.java:55)
    ... 4 more
Caused by: de.tudarmstadt.ukp.dkpro.lab.engine.ExecutionException: 
java.lang.NoClassDefFoundError: gnu/trove/TObjectIntHashMap
    at de.tudarmstadt.ukp.dkpro.lab.engine.impl.ExecutableTaskEngine.run(ExecutableTaskEngine.java:68)
    at de.tudarmstadt.ukp.dkpro.lab.task.impl.BatchTask.runNewExecution(BatchTask.java:350)
    at de.tudarmstadt.ukp.dkpro.lab.task.impl.BatchTask.executeConfiguration(BatchTask.java:255)
    at de.tudarmstadt.ukp.dkpro.lab.task.impl.BatchTask.execute(BatchTask.java:185)
    at de.tudarmstadt.ukp.dkpro.tc.mallet.task.BatchTaskCrossValidation$1.execute(BatchTaskCrossValidation.java:159)
    at de.tudarmstadt.ukp.dkpro.lab.engine.impl.ExecutableTaskEngine.run(ExecutableTaskEngine.java:55)
    ... 9 more
Caused by: java.lang.NoClassDefFoundError: gnu/trove/TObjectIntHashMap
    at cc.mallet.types.Alphabet.<init>(Alphabet.java:51)
    at cc.mallet.types.Alphabet.<init>(Alphabet.java:70)
    at de.tudarmstadt.ukp.dkpro.tc.mallet.util.ConversionToFeatureVectorSequence.<init>(ConversionToFeatureVectorSequence.java:49)
    at de.tudarmstadt.ukp.dkpro.tc.mallet.util.TaskUtils.runTrainCRF(TaskUtils.java:98)
    at de.tudarmstadt.ukp.dkpro.tc.mallet.util.TaskUtils.runTrainTest(TaskUtils.java:180)
    at de.tudarmstadt.ukp.dkpro.tc.mallet.task.TestTask.execute(TestTask.java:96)
    at de.tudarmstadt.ukp.dkpro.lab.engine.impl.ExecutableTaskEngine.run(ExecutableTaskEngine.java:55)
    ... 14 more
Caused by: java.lang.ClassNotFoundException: gnu.trove.TObjectIntHashMap
    at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
    at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
    at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
    ... 21 more

Original issue reported on code.google.com by eckle.kohler on 15 Jul 2014 at 9:31

[GoogleCodeExporter]

Sounds like this may also be a problem in the last release?

Original comment by richard.eckart on 15 Jul 2014 at 1:14

[GoogleCodeExporter]

This is caused by a trove4j version conflict (Mallet requires 2.0.2, we use a 
3.0.3). It has gone unnoticed since there are no tests for the mallet demo, due 
to issue 115. And yes, the 0.6.0 release should be affected as well. 

Original comment by daxenber...@gmail.com on 16 Jul 2014 at 10:34

• Changed state: Accepted

[GoogleCodeExporter]

Original comment by daxenber...@gmail.com on 16 Jul 2014 at 10:34

• Added labels: Milestone-Release0.7.0

[GoogleCodeExporter]

In DKPro Core 1.6.1, we (should have) removed the managed version for trove 
because we never use it directly anywhere. Do you directly use trove in TC?

Original comment by richard.eckart on 16 Jul 2014 at 10:39

[GoogleCodeExporter]

As far as I can see trove4j 3.0.3 was introduced by ark-tweet-nlp.

Original comment by daxenber...@gmail.com on 16 Jul 2014 at 10:53

[GoogleCodeExporter]

This issue was closed by revision r1013.

Original comment by daxenber...@gmail.com on 16 Jul 2014 at 12:19

• Changed state: Fixed

[GoogleCodeExporter]

This issue was updated by revision r1014.

added test cases for Mallet demos to avoid problems like this in the future.

Original comment by daxenber...@gmail.com on 16 Jul 2014 at 12:20

[GoogleCodeExporter]

Original comment by daxenber...@gmail.com on 1 Apr 2015 at 5:10

• Added labels: Release-0.7.0