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ashutoshkpandey / Annotation

Annotate variants using Ensembl gene information and calculate Grantham scores
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Grantham score : update to latest SnpEff (ANN) annotations #1

Open gpcr opened 9 years ago

gpcr commented 9 years ago

Hi @ashutoshkpandey Ashutosh,

It will be great if you can update this to accept latest ANN format of Snpeff

thanks

DaRinker commented 5 years ago

Yes. Or why not just untether it from SnpEFF entirely? Modify the script to accept a user generated vcf file of pre-screened missense variants.

wpf95 commented 2 years ago

Hi i just use SnpEff 5.1 to annotate vcf file , than i use command (python Grantham_score_calculator.py vcf.file result.txt) to run , but i can not get result . python give the recall is name"temp2" is not defined . So, i don not konw how run the Grantham_score_calculator.py to calculator the vcf file. Can you tell me ? Thank you !