shankari
commented
3 years ago @allenmichael099 (in case you want to follow along)
Trying to downgrade since this is currently broken.
Downgrading
``` $ git checkout 72340fb34454e011ac53069b399463925c200d6c M docker_build_and_run.sh Note: switching to '72340fb34454e011ac53069b399463925c200d6c'. HEAD is now at 72340fb Use install_github for DTedit ```
Rebuilding, failed while trying to install package remotes
``` $ docker image rm emdash Error: No such image: emdash kshankar-35069s:emdash kshankar$ docker build -t emdash . [+] Building 327.7s (9/37) => [internal] load build definition from Dockerfile 0.0s => => transferring dockerfile: 3.07kB 0.0s => [internal] load .dockerignore 0.0s => => transferring context: 2B 0.0s => [internal] load metadata for docker.io/rocker/r-ver:4.0.2 0.0s => [ 1/33] FROM docker.io/rocker/r-ver:4.0.2 0.0s => [internal] load build context 0.2s => => transferring context: 1.70MB 0.2s => CACHED [ 2/33] RUN apt-get update && apt-get install -y default-jre-headless gdal-bin git-core imag 0.0s => CACHED [ 3/33] RUN echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.metho 0.0s => CACHED [ 4/33] RUN R -e 'install.packages("remotes")' 0.0s => CANCELED [ 5/33] RUN R -e 'install.packages("devtools")' 327.6s context canceled kshankar-35069s:emdash kshankar$ docker build -t emdash --no-cache . [+] Building 80.6s (10/37) => [internal] load build definition from Dockerfile 0.0s => => transferring dockerfile: 43B 0.0s => [internal] load .dockerignore 0.0s => => transferring context: 2B 0.0s => [internal] load metadata for docker.io/rocker/r-ver:4.0.2 0.0s => [internal] load build context 0.1s => => transferring context: 79.23kB 0.1s => CACHED [ 1/33] FROM docker.io/rocker/r-ver:4.0.2 0.0s => [ 2/33] RUN apt-get update && apt-get install -y default-jre-headless gdal-bin git-core imagemagic 76.0s => [ 3/33] RUN echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'li 0.4s => [ 4/33] RUN R -e 'install.packages("remotes")' 1.9s => [ 5/33] RUN R -e 'install.packages("devtools")' 1.7s => ERROR [ 6/33] RUN R -e 'remotes::install_github("r-lib/remotes", ref = "97bbf81")' 0.6s ------ > [ 6/33] RUN R -e 'remotes::install_github("r-lib/remotes", ref = "97bbf81")': #9 0.384 #9 0.384 R version 4.0.2 (2020-06-22) -- "Taking Off Again" #9 0.384 Copyright (C) 2020 The R Foundation for Statistical Computing #9 0.384 Platform: x86_64-pc-linux-gnu (64-bit) #9 0.384 #9 0.384 R is free software and comes with ABSOLUTELY NO WARRANTY. #9 0.384 You are welcome to redistribute it under certain conditions. #9 0.384 Type 'license()' or 'licence()' for distribution details. #9 0.384 #9 0.384 R is a collaborative project with many contributors. #9 0.384 Type 'contributors()' for more information and #9 0.384 'citation()' on how to cite R or R packages in publications. #9 0.384 #9 0.384 Type 'demo()' for some demos, 'help()' for on-line help, or #9 0.384 'help.start()' for an HTML browser interface to help. #9 0.384 Type 'q()' to quit R. #9 0.384 #9 0.519 > remotes::install_github("r-lib/remotes", ref = "97bbf81") #9 0.521 Error in loadNamespace(name) : there is no package called ‘remotes’ #9 0.521 Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart #9 0.521 Execution halted ------ executor failed running [/bin/sh -c R -e 'remotes::install_github("r-lib/remotes", ref = "97bbf81")']: exit code: 1 kshankar-35069s:emdash kshankar$ docker build -t emdash --no-cache . [+] Building 195.4s (9/37) => [internal] load build definition from Dockerfile 0.0s => => transferring dockerfile: 43B 0.0s => [internal] load .dockerignore 0.0s => => transferring context: 2B 0.0s => [internal] load metadata for docker.io/rocker/r-ver:4.0.2 0.0s => [internal] load build context 0.1s => => transferring context: 79.23kB 0.1s => CACHED [ 1/33] FROM docker.io/rocker/r-ver:4.0.2 0.0s => [ 2/33] RUN apt-get update && apt-get install -y default-jre-headless gdal-bin git-core imagemagic 70.8s => [ 3/33] RUN echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'li 0.3s => [ 4/33] RUN R -e 'install.packages("remotes")' 4.9s => CANCELED [ 5/33] RUN R -e 'install.packages("devtools")' 119.3s context canceled kshankar-35069s:emdash kshankar$ docker build -t emdash . [+] Building 0.6s (10/37) => [internal] load build definition from Dockerfile 0.0s => => transferring dockerfile: 43B 0.0s => [internal] load .dockerignore 0.0s => => transferring context: 2B 0.0s => [internal] load metadata for docker.io/rocker/r-ver:4.0.2 0.0s => [internal] load build context 0.1s => => transferring context: 79.23kB 0.1s => [ 1/33] FROM docker.io/rocker/r-ver:4.0.2 0.0s => CACHED [ 2/33] RUN apt-get update && apt-get install -y default-jre-headless gdal-bin git-core imag 0.0s => CACHED [ 3/33] RUN echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.metho 0.0s => CACHED [ 4/33] RUN R -e 'install.packages("remotes")' 0.0s => CACHED [ 5/33] RUN R -e 'install.packages("devtools")' 0.0s => ERROR [ 6/33] RUN R -e 'remotes::install_github("r-lib/remotes", ref = "97bbf81")' 0.5s ------ > [ 6/33] RUN R -e 'remotes::install_github("r-lib/remotes", ref = "97bbf81")': #9 0.372 #9 0.372 R version 4.0.2 (2020-06-22) -- "Taking Off Again" #9 0.372 Copyright (C) 2020 The R Foundation for Statistical Computing #9 0.372 Platform: x86_64-pc-linux-gnu (64-bit) #9 0.372 #9 0.372 R is free software and comes with ABSOLUTELY NO WARRANTY. #9 0.372 You are welcome to redistribute it under certain conditions. #9 0.372 Type 'license()' or 'licence()' for distribution details. #9 0.372 #9 0.372 R is a collaborative project with many contributors. #9 0.372 Type 'contributors()' for more information and #9 0.372 'citation()' on how to cite R or R packages in publications. #9 0.372 #9 0.372 Type 'demo()' for some demos, 'help()' for on-line help, or #9 0.372 'help.start()' for an HTML browser interface to help. #9 0.372 Type 'q()' to quit R. #9 0.372 #9 0.465 > remotes::install_github("r-lib/remotes", ref = "97bbf81") #9 0.466 Error in loadNamespace(name) : there is no package called ‘remotes’ #9 0.466 Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart #9 0.466 Execution halted ------ executor failed running [/bin/sh -c R -e 'remotes::install_github("r-lib/remotes", ref = "97bbf81")']: exit code: 1 ```
Commented out the DTEdit lines
```
diff --git a/Dockerfile b/Dockerfile
index caf55a4..9393843 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -3,8 +3,8 @@ RUN apt-get update && apt-get install -y default-jre-headless gdal-bin git-core
RUN echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl')" >> /usr/local/lib/R/etc/Rprofile.site
RUN R -e 'install.packages("remotes")'
RUN R -e 'install.packages("devtools")'
-RUN R -e 'remotes::install_github("r-lib/remotes", ref = "97bbf81")'
-RUN Rscript -e 'devtools::install_github("jbryer/DTedit")'
+# RUN R -e 'remotes::install_github("r-lib/remotes", ref = "97bbf81")'
+# RUN Rscript -e 'devtools::install_github("jbryer/DTedit")'
RUN Rscript -e 'remotes::install_version("config",upgrade="never", version = "0.3")'
RUN Rscript -e 'remotes::install_version("golem",upgrade="never", version = "0.2.1")'
RUN Rscript -e 'remotes::install_version("shiny",upgrade="never", version = "1.5.0")'
```
```
=> [11/31] RUN Rscript -e 'remotes::install_version("checkmate",upgrade="never", version = "2.0.0")' 11.2s
=> ERROR [12/31] RUN Rscript -e 'remotes::install_version("mapview",upgrade="never", version = "2.7. 407.8s
------
> [12/31] RUN Rscript -e 'remotes::install_version("mapview",upgrade="never", version = "2.7.8")':
#15 407.8 Error in download_version_url(package, version, repos, type) :
#15 407.8 version '2.7.8' is invalid for package 'mapview'
#15 407.8 Calls:
allenmichael099
asiripanich
The current docker build on master fails.
It gets past all of the initial steps correctly,
but fails on the last step due to some download errors?
Here is a more detailed log of that step
``` => ERROR [10/10] RUN R -e 'remotes::install_local(upgrade="never")' 71.7s ... #14 0.436 > remotes::install_local(upgrade="never") #14 3.671 Installing 109 packages: attempt, backports, base64enc, bit, bit64, bslib, cellranger, checkmate, classInt, colorspace, config, cpp11, credentials, crosstalk, curl, data.table, datamods, DBI, diffobj, dockerfiler, dplyr, DT, e1071, esquisse, farver, flexdashboard, forcats, generics, geojsonsf, geometries, gert, ggplot2, gh, golem, gridExtra, gtable, haven, here, hms, htmltools, htmlwidgets, httpuv, httr, isoband, janitor, jquerylib, jsonify, labeling, later, lazyeval, leafem, leaflet, leaflet.providers, leafpop, lubridate, mapview, mongolite, munsell, openxlsx, plotly, plyr, png, progress, promises, proxy, randomcoloR, rapidjsonr, raster, RColorBrewer, Rcpp, readr, readxl, rematch, rio, rmarkdown, roxygen2, Rtsne, s2, sass, satellite, scales, servr, sf, sfheaders, shiny, shinycssloaders, shinydashboard, shinyWidgets, snakecase, sourcetools, sp, svglite, systemfonts, testthat, tidyr, tidyselect, tinytex, tzdb, units, usethis, uuid, V8, viridis, viridisLite, vroom, waldo, webshot, wk, xtable #14 3.673 Installing packages into ‘/usr/local/lib/R/site-library’ #14 3.673 (as ‘lib’ is unspecified) #14 4.464 trying URL 'https://cran.rstudio.com/src/contrib/attempt_0.3.1.tar.gz' #14 4.871 Content type 'application/x-gzip' length 79261 bytes (77 KB) #14 4.871 ================================================== #14 4.897 downloaded 77 KB #14 4.897 #14 4.899 trying URL 'https://cran.rstudio.com/src/contrib/backports_1.2.1.tar.gz' #14 5.034 Content type 'application/x-gzip' length 21184 bytes (20 KB) #14 5.034 ================================================== #14 5.036 downloaded 20 KB ... #14 10.60 ================================================== #14 10.60 downloaded 10 KB #14 10.60 #14 10.60 trying URL 'https://cran.rstudio.com/src/contrib/dplyr_1.0.7.tar.gz' #14 10.91 Content type 'application/x-gzip' length 852103 bytes (832 KB) #14 10.92 ================================================== #14 11.06 downloaded 832 KB #14 11.06 #14 11.06 trying URL 'https://cran.rstudio.com/src/contrib/DT_0.18.tar.gz' #14 11.36 Content type 'application/x-gzip' length 1578749 bytes (1.5 MB) #14 11.36 ================================================== #14 11.56 downloaded 1.5 MB #14 11.56 #14 11.57 trying URL 'https://cran.rstudio.com/src/contrib/e1071_1.7-8.tar.gz' #14 11.78 Content type 'application/x-gzip' length 581347 bytes (567 KB) #14 11.78 ======================== #14 71.61 downloaded 282 KB #14 71.61 #14 71.61 Error in download.file(url, destfile, method, mode = "wb", ...) : #14 71.61 (converted from warning) downloaded length 288991 != reported length 581347 #14 71.61 Error in download.packages(pkgs, destdir = tmpd, available = available, : #14 71.61 (converted from warning) download of package ‘e1071’ failed #14 71.61 Calls: ... with_envvar -> force -> force -> i.p -> download.packages
#14 71.66 Execution halted
```