Nextflow will not start or continue a process, citing no space left on the device. THis was encountered on the test 'craco' machine', as tempary locations were filled up.
`(base) ubuntu@craco trunk processing> nextflow /home/ubuntu/craco-postproc/craco_postproc/pipelines/main.nf -c configs/220501.config -with-report reports/220501.html -N marcin.glowacki@curtin.edu.au -resume --calibrate
/home/ubuntu/nextflow: line 411: cannot create temp file for here-document: No space left on device
OpenJDK 64-Bit Server VM warning: Insufficient space for shared memory file:
1934387
Try using the -Djava.io.tmpdir= option to select an alternate temp location.
N E X T F L O W ~ version 21.10.6
Launching /home/ubuntu/craco-postproc/craco_postproc/pipelines/main.nf [magical_rosalind] - revision: a3253cb721
/tmp/nxf-10726065449546234530: No space left on device`
When encountered, investigate space on the device - e.g. df -h and check where temporary files are stored.
Unlikely to be an error on ozstar without it being caught quickly, but of note if running CELEBI on a separate device. Clear our work directories every once in a while!
Nextflow will not start or continue a process, citing no space left on the device. THis was encountered on the test 'craco' machine', as tempary locations were filled up.
`(base) ubuntu@craco trunk processing> nextflow /home/ubuntu/craco-postproc/craco_postproc/pipelines/main.nf -c configs/220501.config -with-report reports/220501.html -N marcin.glowacki@curtin.edu.au -resume --calibrate /home/ubuntu/nextflow: line 411: cannot create temp file for here-document: No space left on device OpenJDK 64-Bit Server VM warning: Insufficient space for shared memory file: 1934387 Try using the -Djava.io.tmpdir= option to select an alternate temp location.
N E X T F L O W ~ version 21.10.6 Launching
/home/ubuntu/craco-postproc/craco_postproc/pipelines/main.nf
[magical_rosalind] - revision: a3253cb721 /tmp/nxf-10726065449546234530: No space left on device`When encountered, investigate space on the device - e.g.
df -h
and check where temporary files are stored.