Issue in Nextflow ending shortly after submission of jobs due to permission issues. E.g.:
[mglowack@farnarkle2 processing]$ tail -f frb210912.out
The following have been reloaded with a version change:
1) cython/0.29.16-python-3.7.4 => cython/0.29.21-python-3.7.4
2) numpy/1.18.2-python-3.7.4 => numpy/1.19.2-python-3.7.4
bash: /fred/oz002/askap/craft/craco/modulefiles/nextflow/nextflow: Permission denied
To fix, ensure permissions have been updated in the following areas:
the output/xxxxxx/ directory for the frb
the work/xxxxxx/ directory for the frb
the frbxxxxxx.out file (Nextflow writes to this process).
Issue in Nextflow ending shortly after submission of jobs due to permission issues. E.g.:
[mglowack@farnarkle2 processing]$ tail -f frb210912.out The following have been reloaded with a version change: 1) cython/0.29.16-python-3.7.4 => cython/0.29.21-python-3.7.4 2) numpy/1.18.2-python-3.7.4 => numpy/1.19.2-python-3.7.4 bash: /fred/oz002/askap/craft/craco/modulefiles/nextflow/nextflow: Permission denied
To fix, ensure permissions have been updated in the following areas:
IMPORTANT: Use chmod -R 775 directory