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asntech / intervene

Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
http://intervene.rtfd.io/
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intervene venn doesn't work with "--bedtools-option s=True" #28

Open kerenzhou062 opened 4 years ago

kerenzhou062 commented 4 years ago

Can intervene be complemented with "bedtools intersect -s "? (that is intersecting peaks by strand)

asntech commented 4 years ago

You should use like this: intervene venn -i *.bed --bedtools-option s instead of s=True or -s

kerenzhou062 commented 4 years ago

I tried run intervene venn --bedtools-options s, but it returned the same result with that without --bedtools-options s.