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asntech / intervene

Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
http://intervene.rtfd.io/
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update intervene's bedtools #33

Closed mortunco closed 3 years ago

mortunco commented 4 years ago

Hello,

I am having the exact issue below. When i update my bedtools, it solves the problem.

Is there a way to intagrate more updated version of the bedtools in intervene?

Thank you for developing and maintaining such an useful software.

Best,

T.

https://github.com/arq5x/bedtools/issues/153

Rohit-Satyam commented 3 years ago

Hi! For me, conda version works fine with a little bit of version warning for matplotlib. Create a new environment in conda and install intervene using the command conda install -c bioconda intervene. This way you will not require to install bedtools separately.

Hope this helps!! Cheers!!

asntech commented 3 years ago

I've updated the conda recipe and set bedtools >=2.29.1. This would fix this. Thanks!