Error using upset due to old version of UpSetR module in conda installation

asntech / intervene

Intervene: a tool for intersection and visualization of multiple genomic region and gene sets

http://intervene.rtfd.io/

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Error using upset due to old version of UpSetR module in conda installation #38

Closed nkschaefer closed 3 years ago

nkschaefer commented 3 years ago

Hi,

I installed intervene using conda, but when running intervene upset, I ran into the following error:

Error in upset(fromExpression(expressionInput), nsets = 4, nintersects = 30,  : 
  unused arguments (mainbar.y.label = "No. of Intersections", sets.x.label = "Set size")
Execution halted

I checked, and the version of UpSetR that shipped with the conda installation was 1.3.0. I installed version 1.4.0 from source and it fixed this error. I think this dependency should be updated.

mortunco commented 3 years ago

I know its totally repeating the solution but might be useful for some people

stuff below fixed the error for me.

conda install -c conda-forge r-upsetr=1.4.0