Help running intervene?

[jsanmig]

Hello! I'm a novice user of python and condas, so please bear with me:

I was able to install intervene using condas and can see it in my environment using list:

conda list

packages in environment at /anaconda3/envs/snakes:

#

Name Version Build Channel

bcftools 1.8 h4da6232_3 bioconda bedops 2.4.39 h770b8ee_0 bioconda bedtools 2.29.2 h37cfd92_0 bioconda blas 1.0 mkl
bzip2 1.0.8 h1de35cc_0
ca-certificates 2020.11.8 h033912b_0 conda-forge certifi 2018.8.24 py35_1001 conda-forge curl 7.61.1 ha441bb4_0
cycler 0.10.0 py35hb89929e_0
freetype 2.10.4 ha233b18_0
htslib 1.7 0 bioconda intel-openmp 2019.4 233
intervene 0.5.8 py35_0 bioconda kiwisolver 1.0.1 py35h219a9d8_0
libcurl 7.61.1 hf30b1f0_0
libcxx 10.0.0 1
libdeflate 1.2 h01d97ff_1 bioconda libedit 3.1.20191231 h1de35cc_1
libffi 3.2.1 h0a44026_1007
libgfortran 3.0.1 h93005f0_2
libpng 1.6.37 ha441bb4_0
libssh2 1.8.0 h322a93b_4
matplotlib 3.0.0 py35h54f8f79_0
mkl 2018.0.3 1
mkl_fft 1.0.6 py35hb8a8100_0
mkl_random 1.0.1 py35h5d10147_1
ncurses 6.2 h0a44026_1
numpy 1.15.2 py35h6a91979_0
numpy-base 1.15.2 py35h8a80b8c_0
openssl 1.0.2u h0b31af3_0 conda-forge pandas 0.23.4 py35h6440ff4_0
patsy 0.5.0 py35_0
pip 10.0.1 py35_0
pybedtools 0.8.0 py35ha92aebf_0 bioconda pyparsing 2.4.7 py_0
pysam 0.14.1 py35hae42fb6_1 bioconda python 3.5.6 hc167b69_0
python-dateutil 2.8.1 py_0
pytz 2020.1 py_0
readline 7.0 h1de35cc_5
samtools 1.7 1 bioconda scipy 1.1.0 py35h28f7352_1
seaborn 0.9.0 pyh91ea838_1
setuptools 40.2.0 py35_0
six 1.15.0 py_0
sqlite 3.33.0 hffcf06c_0
statsmodels 0.9.0 py35h917ab60_0
tbb 2020.3 h879752b_0
tbb4py 2018.0.5 py35h04f5b5a_0
tk 8.6.10 hb0a8c7a_0
tornado 5.1.1 py35h1de35cc_0
wheel 0.35.1 py_0
xz 5.2.5 h1de35cc_0
zlib 1.2.11 h1de35cc_3

However, when I try to run $intervene --help or $intervene I get the following message: Traceback (most recent call last): File "/anaconda3/envs/snakes/bin/intervene", line 4, in import('pkg_resources').run_script('intervene==0.5.8', 'intervene') File "/anaconda3/envs/snakes/lib/python3.5/site-packages/pkg_resources/init.py", line 3105, in @_call_aside File "/anaconda3/envs/snakes/lib/python3.5/site-packages/pkg_resources/init.py", line 3089, in _call_aside f(*args, **kwargs) File "/anaconda3/envs/snakes/lib/python3.5/site-packages/pkg_resources/init.py", line 3118, in _initialize_master_working_set working_set = WorkingSet._build_master() File "/anaconda3/envs/snakes/lib/python3.5/site-packages/pkg_resources/init.py", line 578, in _build_master ws.require(requires) File "/anaconda3/envs/snakes/lib/python3.5/site-packages/pkg_resources/init.py", line 895, in require needed = self.resolve(parse_requirements(requirements)) File "/anaconda3/envs/snakes/lib/python3.5/site-packages/pkg_resources/init.py", line 781, in resolve raise DistributionNotFound(req, requirers) pkg_resources.DistributionNotFound: The 'intervene==0.5.8' distribution was not found and is required by the application

If I try to run bedtools for example, I have no issues.

Has it not installed properly? Am I missing something? Any help would be greatly appreciated. Thanks so much!!

[asntech]

It seems you installed an older version. Please try this: conda install -c bioconda intervene=0.6.4

[jsanmig]

Hi!! I think not specifying the version on my first go-round had messed everything up! I made a new environment and was able to get intervene to install using 0.6.4. Thank you so much!