Bedtools-options does not produce different results

asntech / intervene

Intervene: a tool for intersection and visualization of multiple genomic region and gene sets

http://intervene.rtfd.io/

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Closed MikeWLloyd closed 2 years ago

MikeWLloyd commented 2 years ago

I am trying to get the bedtools option 'f' to work with intervene.

I run the following command:

singularity run intervene_0.6.5--pyh3252c3a_1.sif intervene upset -i mm*.bed --bedtools-options f=0.1 -o BedFOn

However, the results do not differ from the base command.

Is my syntax incorrect?

MikeWLloyd commented 2 years ago

Perhaps I am just looking at this the wrong way. Seems increasing to higher threshold works. My mistake.