Closed kyleLesack closed 1 year ago
@kyleLesack sorry for late reply. Did you fix this one if not can you please try this?
R -e 'install.packages("UpSetR")'
Hello,
No need to apologize. No, I never got it working.
I just created a new conda environment with R and ran the command you listed, but I still got the same errors as listed above when installing intervene.
Thanks for your help.
It seems the bioconda
channel has an older version of r-upsetr
. You need to also add conda-forge
to the channels.
Try this:
conda create -n intervene -c bioconda -c conda-forge -c defaults intervene=0.6.5
OR
mamba install -c bioconda -c conda-forge -c defaults intervene=0.6.5
Just in case - I also added a Docker container for intervene #52
It seems the
bioconda
channel has an older version ofr-upsetr
. You need to also addconda-forge
to the channels.Try this:
conda create -n intervene -c bioconda -c conda-forge -c defaults intervene=0.6.5
ORmamba install -c bioconda -c conda-forge -c defaults intervene=0.6.5
I just tried the conda command and it worked. Thanks!
Hello. I am trying to install Intervene using conda, but haven't had any luck so far. I have tried some of the recommendations mentioned in some of the other issues, but they haven't worked either.
I tried forcing conda to install version 0.6.5:
That's the full error message by the way. Nothing is printed after UnsatisfiableError.
I also tried specifying the Python version:
I also tried using mamba, but it can't find the needed version of upsetr:
I would appreciate any help. Thanks in advance!