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assemblerflow / docker-imgs

A repository to store all the docker images used in flowcraft
GNU General Public License v3.0
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Add bandage #4

Closed sjackman closed 5 years ago

sjackman commented 5 years ago

The pull request for the Flowcraft component is coming tomorrow.

sjackman commented 5 years ago

I've update this PR to use the static executable https://github.com/rrwick/Bandage/releases to make a smaller image than using a package manager.

The quay.io/biocontainers/bandage:0.8.1--hb59a952_0 image unfortunately doesn't work.

# Bandage --version
This application failed to start because it could not find or load the Qt platform plugin "minimal"
in "".

Available platform plugins are: minimal, offscreen, xcb.

Reinstalling the application may fix this problem.
Aborted

The Linuxbrew Docker image after brew install blast brewsci/bio/bandage was 3.9 GB!

ODiogoSilva commented 5 years ago

Whoa! Ok, this one looks good, I'll have it building shortly. 👍

sjackman commented 5 years ago

I forgot BLAST! wait one sec before building the image.

sjackman commented 5 years ago

See PR https://github.com/assemblerflow/docker-imgs/pull/5 to add BLAST to this image.