codecov-io
commented
5 years ago Codecov Report
Merging #191 into dev will decrease coverage by
2.37%. The diff coverage is3.09%.
@@ Coverage Diff @@
## dev #191 +/- ##
==========================================
- Coverage 43.96% 41.59% -2.38%
==========================================
Files 67 69 +2
Lines 6036 6404 +368
==========================================
+ Hits 2654 2664 +10
- Misses 3382 3740 +358| Impacted Files | Coverage Δ | |
|---|---|---|
| flowcraft/generator/components/mlst.py | 100% <ø> (ø) |
:arrow_up: |
| flowcraft/templates/spades.py | 0% <ø> (ø) |
:arrow_up: |
| flowcraft/generator/recipes/innuca.py | 100% <ø> (ø) |
:arrow_up: |
| flowcraft/templates/integrity_coverage.py | 0% <0%> (ø) |
:arrow_up: |
| flowcraft/templates/process_assembly_mapping.py | 0% <0%> (ø) |
:arrow_up: |
| flowcraft/templates/run_mlst.py | 0% <0%> (ø) |
|
| flowcraft/templates/fastqc_report.py | 0% <0%> (ø) |
:arrow_up: |
| flowcraft/templates/metaspades.py | 0% <0%> (ø) |
:arrow_up: |
| flowcraft/templates/process_assembly.py | 0% <0%> (ø) |
:arrow_up: |
| flowcraft/templates/insert_size.py | 0% <0%> (ø) |
|
| ... and 5 more |
Continue to review full report at Codecov.
Legend - Click here to learn more
Δ = absolute <relative> (impact),ø = not affected,? = missing dataPowered by Codecov. Last update a55c431...e62ee23. Read the comment docs.
This PR updates the modules in Innuca's recipe to incorporate the latest changes in the INNUca pipeline (https://github.com/B-UMMI/INNUca). Several components where updated and/or reworked including integrity_coverage, mlst, process_assembly and process_assembly_mapping. A new component, named "insert_size" was added. I apologize for the length of the PR. They made me do it! :P
Enjoy the code review.
This change is