cimendes
commented
5 years ago Hello!
Indeed the easiest way to alter the containers used for a given process is to edit the containers.config file. Alternatively, this can also be directly altered when generating a pipeline with the flowcraft build.
For example, to alter a container for the spades container i would do:
flowcraft build -t "spades={'container':'cimendes/metaspades','version':'11.10.2018-1'}" -o best_container_ever.nfWhen I open up the containers.config file this is what I get:
process {
$spades_1_2.container = "cimendes/metaspades:11.10.2018-1"
}More information on this is available in FlowCraft's docs here. ;)
I hope this is helpful!
Inês
AKWB
Hi there,
I was wondering how I can tell flowcraft to use my own docker, which are placed in an inhouse gitlab repository. I know, it is better to use those from flowcraft, but for some things I might need to use very specific versions of tools or maybe even docker container based on self made scripts. What I managed already is to simple exchange the "address" of the container in the container.config generated by flowcraft build.
However, as far as I understand - by default the pipeline is built with those containers available in the flowcraft docker hub repository. Thus I am wondering, if I can at all use docker container which are not listed in the flowcraft docker hub but only in our gitlab repository and how I tell flowcraft to use them. I hope I did not miss that point in your docs...
Greets