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asteinberger9 / seq_scripts

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simper.pretty #6

Closed LorgasBG closed 2 months ago

LorgasBG commented 8 months ago

Hi, I have been running simper without problems simper(fourth_root_sqrt_OTU_abundances_relative, AGDX_samples$Fjord, permutations=1000)

However, when I tried to repeat the analysis with simper.pretty simper.pretty(fourth_root_sqrt_OTU_abundances_relative, AGDX_samples, c('Fjord'), perc_cutoff=1, low_cutoff = 'y', low_val=0.01, '_relative_abundances')

I get an error message: Error in tapply(x, group, mean) : arguments must have same length

I am just wondering if someone else have reported the same error or it is actually something with the format of my files. Thanks in advance, Lorgas

asteinberger9 commented 2 months ago

Hi @LorgasBG, I apologize for my extremely late reply to your issue. The error message generated is often caused by incorrect formatting of either your OTU or metadata table. Please refer to the README for details on what acceptable input formats are for these scripts and doublecheck that your inputs comply. I hope you were already able to figure it out or found an alternative approach for your analysis.