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astheeggeggs / lshmm

code to run Li and Stephens
MIT License
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API functions to run over multiple input queries #77

Open szhan opened 3 months ago

szhan commented 3 months ago

The current API functions do not loop over multiple queries, as far as I can tell.

szhan commented 3 months ago

How would we want to do this? If we run, say, the forward pass of haploid Viterbi, what should we return? A list of V, P, ll, one per query?