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astheeggeggs / lshmm

code to run Li and Stephens
MIT License
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Refactor function to get emission probability in the haploid case #99

Closed szhan closed 3 months ago

szhan commented 3 months ago

Fix #98

szhan commented 3 months ago

Note also that in get_examples_haploid is modified to produce query_miss_most with MISSING from the third site to the last instead of from the second site to the last as before. The latter can lead to noise-level differences in log-likelihood during testing.