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astral-sh / uv

An extremely fast Python package and project manager, written in Rust.
https://docs.astral.sh/uv
Apache License 2.0
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Old version of torch will be reinstalled. #2560

Closed phalanx-hk closed 8 months ago

phalanx-hk commented 8 months ago

Overview

Steps to Reproduce

Place the following Dockerfile and compose.yml in the current directory

FROM nvcr.io/nvidia/pytorch:24.02-py3

ARG UID=1000
ARG GID=1000
ARG USERNAME=vscode

ENV DEBIAN_FRONTEND=noninteractive \
    LANG=ja_JP.UTF-8 \
    TZ=Asia/Tokyo \
    apt_get_server=ftp.jaist.ac.jp/pub/Linux \
    PYTHONDONTWRITEBYTECODE=1 \
    PYTHONUNBUFFERED=1 \
    VIRTUAL_ENV=/usr/

WORKDIR /workspace

SHELL ["/bin/bash", "-o", "pipefail", "-c"]
RUN \
    # apt
    --mount=type=cache,target=/var/cache/apt \
    --mount=type=cache,target=/var/lib/apt \
    rm /etc/apt/apt.conf.d/docker-clean \
    && sed -i s@archive.ubuntu.com@${apt_get_server}@g /etc/apt/sources.list \
    && curl -sL https://raw.githubusercontent.com/eza-community/eza/main/deb.asc | gpg --dearmor -o /etc/apt/keyrings/gierens.gpg \
    && echo "deb [signed-by=/etc/apt/keyrings/gierens.gpg] http://deb.gierens.de stable main" | tee /etc/apt/sources.list.d/gierens.list \
    && chmod 644 /etc/apt/keyrings/gierens.gpg /etc/apt/sources.list.d/gierens.list \
    && apt-get update \
    && apt-get install -y --no-install-recommends \
    bat \
    fd-find \
    ripgrep \
    eza \
    shellcheck \
    tmux \
    zsh \
    sudo \
    && ln -s "$(which batcat)" /usr/local/bin/bat \
    && ln -s "$(which fdfind)" /usr/local/bin/fd \
    # just command runner
    && curl --proto '=https' --tlsv1.2 -sSf https://just.systems/install.sh | bash -s -- --to /usr/local/bin \
    # hadolint
    && curl -fSL "https://github.com/hadolint/hadolint/releases/download/$(curl -s https://api.github.com/repos/hadolint/hadolint/releases/latest | jq -r '.tag_name')/hadolint-Linux-x86_64" -o /usr/local/bin/hadolint \
    && chmod +x /usr/local/bin/hadolint \
    # uv
    && pip install --no-cache-dir uv \
    # add user
    && groupadd --gid ${GID} ${USERNAME} \
    && useradd -l --uid ${UID} --gid ${GID} -m ${USERNAME} \
    && echo "${USERNAME} ALL=(ALL) NOPASSWD: ALL" > /etc/sudoers.d/${USERNAME}

USER ${USERNAME}
services:
  kaggle:
    build:
      dockerfile: ./Dockerfile
      args:
        - UID=${UID}
        - GID=${GID}
    restart: always
    tty: true
    volumes:
      - type: bind
        source: .
        target: /workspace
        read_only: false
        consistency: cached
    ipc: host
    ulimits:
      memlock: -1
      stack: -1
    ports:
      - "8888:8888"
    deploy:
      resources:
        reservations:
          devices:
            - driver: nvidia
              capabilities: [gpu]
    command: jupyter lab --ip=0.0.0.0 --port 8888 --allow-root --NotebookApp.notebook_dir=/workspace --no-browser --LabApp.token=''

Run the following command

$ docker compose up -d
$ docker compose exec kaggle sudo uv pip install timm==0.9.7

Expected Result

torch is not reinstalled because it meets the requirements of timm, only timm is installed.

Actual Result

Installed 15 packages in 187ms
 + nvidia-cublas-cu12==12.1.3.1
 + nvidia-cuda-cupti-cu12==12.1.105
 + nvidia-cuda-nvrtc-cu12==12.1.105
 + nvidia-cuda-runtime-cu12==12.1.105
 + nvidia-cudnn-cu12==8.9.2.26
 + nvidia-cufft-cu12==11.0.2.54
 + nvidia-curand-cu12==10.3.2.106
 + nvidia-cusolver-cu12==11.4.5.107
 + nvidia-cusparse-cu12==12.1.0.106
 + nvidia-nccl-cu12==2.19.3
 + nvidia-nvjitlink-cu12==12.4.99
 + nvidia-nvtx-cu12==12.1.105
 + timm==0.9.7
 - torch==2.3.0a0+ebedce2 (from file:///tmp/pip/torch-2.3.0a0%2Bebedce2-cp310-cp310-linux_x86_64.whl)
 + torch==2.2.1
 - torchvision==0.18.0a0 (from file:///opt/pytorch/vision)
 + torchvision==0.17.1
phalanx-hk commented 8 months ago

add detailed output when installed with --verbose. It looks like uv is not taking into account the torch already installed.

vscode@87c64796d33c:/workspace$ sudo uv pip install timm==0.9.7 --verbose
DEBUG Found a virtualenv through VIRTUAL_ENV at: /usr/
DEBUG Cached interpreter info for Python 3.10.12, skipping probing: /usr/bin/python
DEBUG Using Python 3.10.12 environment at /usr/bin/python
DEBUG Using registry request timeout of 300s
DEBUG Solving with target Python version 3.10.12
DEBUG Adding direct dependency: timm==0.9.7
DEBUG No cache entry for: https://pypi.org/simple/timm/
DEBUG No credentials found for: https://pypi.org/simple/timm/
DEBUG Searching for a compatible version of timm (==0.9.7)
DEBUG Selecting: timm==0.9.7 (timm-0.9.7-py3-none-any.whl)
DEBUG No cache entry for: https://files.pythonhosted.org/packages/7a/bd/2c56be7a3b5bc71cf85a405246b89d5359f942c9f7fb6db6306d9d056092/timm-0.9.7-py3-none-any.whl.metadata
DEBUG No credentials found for: https://files.pythonhosted.org/packages/7a/bd/2c56be7a3b5bc71cf85a405246b89d5359f942c9f7fb6db6306d9d056092/timm-0.9.7-py3-none-any.whl.metadata
DEBUG Adding transitive dependency: torch>=1.7
DEBUG Adding transitive dependency: torchvision*
DEBUG Adding transitive dependency: pyyaml*
DEBUG Adding transitive dependency: huggingface-hub*
DEBUG Adding transitive dependency: safetensors*
DEBUG No cache entry for: https://pypi.org/simple/torch/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/torch/
DEBUG No credentials found for: https://pypi.org/simple/torch/
DEBUG No cache entry for: https://pypi.org/simple/torchvision/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/torchvision/
DEBUG No credentials found for: https://pypi.org/simple/torchvision/
DEBUG Found stale response for: https://pypi.org/simple/huggingface-hub/
DEBUG Sending revalidation request for: https://pypi.org/simple/huggingface-hub/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/huggingface-hub/
DEBUG No credentials found for: https://pypi.org/simple/huggingface-hub/
DEBUG Found stale response for: https://pypi.org/simple/pyyaml/
DEBUG Sending revalidation request for: https://pypi.org/simple/pyyaml/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/pyyaml/
DEBUG No credentials found for: https://pypi.org/simple/pyyaml/
DEBUG Found stale response for: https://pypi.org/simple/safetensors/
DEBUG Sending revalidation request for: https://pypi.org/simple/safetensors/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/safetensors/
DEBUG No credentials found for: https://pypi.org/simple/safetensors/
DEBUG Found not-modified response for: https://pypi.org/simple/safetensors/
DEBUG Found not-modified response for: https://pypi.org/simple/pyyaml/
DEBUG Found not-modified response for: https://pypi.org/simple/huggingface-hub/
DEBUG No cache entry for: https://files.pythonhosted.org/packages/a7/ad/fbe7d4cffb76da4e478438853b51305361c719cff929ab70a808e7fb75e7/torch-2.2.1-cp310-cp310-manylinux1_x86_64.whl.metadata
DEBUG No credentials found for already-seen URL: https://files.pythonhosted.org/packages/a7/ad/fbe7d4cffb76da4e478438853b51305361c719cff929ab70a808e7fb75e7/torch-2.2.1-cp310-cp310-manylinux1_x86_64.whl.metadata
DEBUG No credentials found for: https://files.pythonhosted.org/packages/a7/ad/fbe7d4cffb76da4e478438853b51305361c719cff929ab70a808e7fb75e7/torch-2.2.1-cp310-cp310-manylinux1_x86_64.whl.metadata
DEBUG Searching for a compatible version of torch (>=1.7)
DEBUG Selecting: torch==2.2.1 (torch-2.2.1-cp310-cp310-manylinux1_x86_64.whl)
DEBUG Found fresh response for: https://files.pythonhosted.org/packages/29/61/bf33c6c85c55bc45a29eee3195848ff2d518d84735eb0e2d8cb42e0d285e/PyYAML-6.0.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata
DEBUG No cache entry for: https://files.pythonhosted.org/packages/1a/e8/13432ae6be567b577a4c89d1bd50084e4d989b379a7be8050380b5ab3a6e/torchvision-0.17.1-cp310-cp310-manylinux1_x86_64.whl.metadata
DEBUG No credentials found for already-seen URL: https://files.pythonhosted.org/packages/1a/e8/13432ae6be567b577a4c89d1bd50084e4d989b379a7be8050380b5ab3a6e/torchvision-0.17.1-cp310-cp310-manylinux1_x86_64.whl.metadata
DEBUG No credentials found for: https://files.pythonhosted.org/packages/1a/e8/13432ae6be567b577a4c89d1bd50084e4d989b379a7be8050380b5ab3a6e/torchvision-0.17.1-cp310-cp310-manylinux1_x86_64.whl.metadata
DEBUG Found fresh response for: https://files.pythonhosted.org/packages/ab/28/d4b691840d73126d4c9845f8a22dad033ac872509b6d3a0d93b456eef424/huggingface_hub-0.21.4-py3-none-any.whl.metadata
DEBUG Found fresh response for: https://files.pythonhosted.org/packages/d0/ba/b2254fafc7f5fdc98a2fa4d5a5eeb029fbf9589ec87f2c230c3ac0a1dd53/safetensors-0.4.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata
DEBUG Adding transitive dependency: filelock*
DEBUG Adding transitive dependency: typing-extensions>=4.8.0
DEBUG Adding transitive dependency: sympy*
DEBUG Adding transitive dependency: networkx*
DEBUG Adding transitive dependency: jinja2*
DEBUG Adding transitive dependency: fsspec*
DEBUG Adding transitive dependency: nvidia-cuda-nvrtc-cu12==12.1.105
DEBUG Adding transitive dependency: nvidia-cuda-runtime-cu12==12.1.105
DEBUG Adding transitive dependency: nvidia-cuda-cupti-cu12==12.1.105
DEBUG Adding transitive dependency: nvidia-cudnn-cu12==8.9.2.26
DEBUG Adding transitive dependency: nvidia-cublas-cu12==12.1.3.1
DEBUG Adding transitive dependency: nvidia-cufft-cu12==11.0.2.54
DEBUG Adding transitive dependency: nvidia-curand-cu12==10.3.2.106
DEBUG Adding transitive dependency: nvidia-cusolver-cu12==11.4.5.107
DEBUG Adding transitive dependency: nvidia-cusparse-cu12==12.1.0.106
DEBUG Adding transitive dependency: nvidia-nccl-cu12==2.19.3
DEBUG Adding transitive dependency: nvidia-nvtx-cu12==12.1.105
DEBUG Adding transitive dependency: triton==2.2.0
DEBUG Searching for a compatible version of torchvision (*)
DEBUG Selecting: torchvision==0.17.1 (torchvision-0.17.1-cp310-cp310-manylinux1_x86_64.whl)
DEBUG Adding transitive dependency: numpy*
DEBUG Adding transitive dependency: torch==2.2.1
DEBUG Adding transitive dependency: pillow>=5.3.0, <8.3.dev0 | >=8.4.dev0
DEBUG Searching for a compatible version of pyyaml (*)
DEBUG Selecting: pyyaml==6.0.1 (PyYAML-6.0.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl)
DEBUG Searching for a compatible version of huggingface-hub (*)
DEBUG Selecting: huggingface-hub==0.21.4 (huggingface_hub-0.21.4-py3-none-any.whl)
DEBUG Adding transitive dependency: filelock*
DEBUG Adding transitive dependency: fsspec>=2023.5.0
DEBUG Adding transitive dependency: requests*
DEBUG Adding transitive dependency: tqdm>=4.42.1
DEBUG Adding transitive dependency: pyyaml>=5.1
DEBUG Adding transitive dependency: typing-extensions>=3.7.4.3
DEBUG Adding transitive dependency: packaging>=20.9
DEBUG Searching for a compatible version of safetensors (*)
DEBUG Selecting: safetensors==0.4.2 (safetensors-0.4.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl)
DEBUG No cache entry for: https://pypi.org/simple/sympy/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/sympy/
DEBUG No credentials found for: https://pypi.org/simple/sympy/
DEBUG No cache entry for: https://pypi.org/simple/networkx/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/networkx/
DEBUG No credentials found for: https://pypi.org/simple/networkx/
DEBUG Found stale response for: https://pypi.org/simple/filelock/
DEBUG Sending revalidation request for: https://pypi.org/simple/filelock/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/filelock/
DEBUG No credentials found for: https://pypi.org/simple/filelock/
DEBUG Found stale response for: https://pypi.org/simple/typing-extensions/
DEBUG Sending revalidation request for: https://pypi.org/simple/typing-extensions/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/typing-extensions/
DEBUG No credentials found for: https://pypi.org/simple/typing-extensions/
DEBUG Found stale response for: https://pypi.org/simple/jinja2/
DEBUG Sending revalidation request for: https://pypi.org/simple/jinja2/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/jinja2/
DEBUG No credentials found for: https://pypi.org/simple/jinja2/
DEBUG No cache entry for: https://pypi.org/simple/nvidia-cuda-nvrtc-cu12/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/nvidia-cuda-nvrtc-cu12/
DEBUG No credentials found for: https://pypi.org/simple/nvidia-cuda-nvrtc-cu12/
DEBUG Found stale response for: https://pypi.org/simple/fsspec/
DEBUG Sending revalidation request for: https://pypi.org/simple/fsspec/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/fsspec/
DEBUG No credentials found for: https://pypi.org/simple/fsspec/
DEBUG No cache entry for: https://pypi.org/simple/nvidia-cuda-cupti-cu12/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/nvidia-cuda-cupti-cu12/
DEBUG No credentials found for: https://pypi.org/simple/nvidia-cuda-cupti-cu12/
DEBUG No cache entry for: https://pypi.org/simple/nvidia-cudnn-cu12/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/nvidia-cudnn-cu12/
DEBUG No credentials found for: https://pypi.org/simple/nvidia-cudnn-cu12/
DEBUG No cache entry for: https://pypi.org/simple/nvidia-cublas-cu12/
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DEBUG No credentials found for: https://pypi.org/simple/nvidia-cublas-cu12/
DEBUG No cache entry for: https://pypi.org/simple/nvidia-cuda-runtime-cu12/
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DEBUG No cache entry for: https://pypi.org/simple/nvidia-cusolver-cu12/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/nvidia-cusolver-cu12/
DEBUG No credentials found for: https://pypi.org/simple/nvidia-cusolver-cu12/
DEBUG No cache entry for: https://pypi.org/simple/nvidia-nccl-cu12/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/nvidia-nccl-cu12/
DEBUG No credentials found for: https://pypi.org/simple/nvidia-nccl-cu12/
DEBUG No cache entry for: https://pypi.org/simple/nvidia-nvtx-cu12/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/nvidia-nvtx-cu12/
DEBUG No credentials found for: https://pypi.org/simple/nvidia-nvtx-cu12/
DEBUG No cache entry for: https://pypi.org/simple/triton/
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DEBUG No cache entry for: https://pypi.org/simple/nvidia-cufft-cu12/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/nvidia-cufft-cu12/
DEBUG No credentials found for: https://pypi.org/simple/nvidia-cufft-cu12/
DEBUG No cache entry for: https://pypi.org/simple/nvidia-cusparse-cu12/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/nvidia-cusparse-cu12/
DEBUG No credentials found for: https://pypi.org/simple/nvidia-cusparse-cu12/
DEBUG Found stale response for: https://pypi.org/simple/tqdm/
DEBUG Sending revalidation request for: https://pypi.org/simple/tqdm/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/tqdm/
DEBUG No credentials found for: https://pypi.org/simple/tqdm/
DEBUG Found stale response for: https://pypi.org/simple/requests/
DEBUG Sending revalidation request for: https://pypi.org/simple/requests/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/requests/
DEBUG No credentials found for: https://pypi.org/simple/requests/
DEBUG Found stale response for: https://pypi.org/simple/packaging/
DEBUG Sending revalidation request for: https://pypi.org/simple/packaging/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/packaging/
DEBUG No credentials found for: https://pypi.org/simple/packaging/
DEBUG Found stale response for: https://pypi.org/simple/pillow/
DEBUG Sending revalidation request for: https://pypi.org/simple/pillow/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/pillow/
DEBUG No credentials found for: https://pypi.org/simple/pillow/
DEBUG Found stale response for: https://pypi.org/simple/numpy/
DEBUG Sending revalidation request for: https://pypi.org/simple/numpy/
DEBUG No credentials found for already-seen URL: https://pypi.org/simple/numpy/
DEBUG No credentials found for: https://pypi.org/simple/numpy/
DEBUG Found not-modified response for: https://pypi.org/simple/typing-extensions/
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DEBUG Found not-modified response for: https://pypi.org/simple/requests/
DEBUG Found not-modified response for: https://pypi.org/simple/fsspec/
DEBUG Found not-modified response for: https://pypi.org/simple/packaging/
DEBUG Found not-modified response for: https://pypi.org/simple/tqdm/
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DEBUG Found not-modified response for: https://pypi.org/simple/numpy/
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Downloaded 15 packages in 34.05s
DEBUG Uninstalled torch (12263 files, 743 directories)
DEBUG Uninstalled torchvision (494 files, 51 directories)
Installed 15 packages in 187ms
 + nvidia-cublas-cu12==12.1.3.1
 + nvidia-cuda-cupti-cu12==12.1.105
 + nvidia-cuda-nvrtc-cu12==12.1.105
 + nvidia-cuda-runtime-cu12==12.1.105
 + nvidia-cudnn-cu12==8.9.2.26
 + nvidia-cufft-cu12==11.0.2.54
 + nvidia-curand-cu12==10.3.2.106
 + nvidia-cusolver-cu12==11.4.5.107
 + nvidia-cusparse-cu12==12.1.0.106
 + nvidia-nccl-cu12==2.19.3
 + nvidia-nvjitlink-cu12==12.4.99
 + nvidia-nvtx-cu12==12.1.105
 + timm==0.9.7
 - torch==2.3.0a0+ebedce2 (from file:///tmp/pip/torch-2.3.0a0%2Bebedce2-cp310-cp310-linux_x86_64.whl)
 + torch==2.2.1
 - torchvision==0.18.0a0 (from file:///opt/pytorch/vision)
 + torchvision==0.17.1
charliermarsh commented 8 months ago

Thanks for the clear write-up. This is actually the same as https://github.com/astral-sh/uv/issues/1661, as far as I can tell: you have an already-installed version of Torch that you want to retain, but it doesn't exist on the index, so we don't find it during pip install resolution. I'll try to fix that bug this week or next depending on how much time I have.

charliermarsh commented 8 months ago

Closing as a duplicate (though a non-obvious one).

bamps53 commented 8 months ago

FYI, as a temporary workaround, we can create an overrides.txt file like this:

torch @ file:///tmp/pip/torch-2.3.0a0%2Bebedce2-cp310-cp310-linux_x86_64.whl
torch-tensorrt @ file:///opt/pytorch/torch_tensorrt/dist/torch_tensorrt-2.3.0a0-cp310-cp310-linux_x86_64.whl
torchdata @ file:///opt/pytorch/data
torchtext @ file:///opt/pytorch/text
torchvision @ file:///opt/pytorch/vision
triton @ file:///tmp/dist/triton-2.2.0%2Be28a256-cp310-cp310-linux_x86_64.whl

Using the command sudo uv pip install timm==0.9.7 --override overrides.txt works fine.

However, this approach is not effective if you need to downgrade torch.

charliermarsh commented 8 months ago

Ahh interesting. That makes sense.

bamps53 commented 8 months ago

@charliermarsh In my opinion, it is unrealistic to accurately resolve all custom build versions such as torch-2.3.0a0. (or even just commit hash for some case) If we could manually register the library version (for instance, I would like to register torch as 2.3.0), it would provide a more flexible way to handle corner cases.

zanieb commented 7 months ago

Hi! This should be addressed in the latest release (0.1.27) via #2596.

Let us know if you have any problems.

phalanx-hk commented 7 months ago

Thanks! Latest version completely resolve this problem.

$ sudo uv pip install timm
Resolved 23 packages in 46ms
Installed 1 package in 6ms
 + timm==0.9.16