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astrazeneca-cgr-publications / PEACOK

Phenome Exome Association and Correlation Of Key phenotypes
GNU General Public License v3.0
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Was wondering if you plan to support newer versions of R #1

Open parkcc opened 3 years ago

parkcc commented 3 years ago

For instance R 4.1.1.

I do understand that you may have to freeze development for such a large effort.

Thank you, Chris Park cpark1@illumina.com

QuanliWang commented 3 years ago

Hi Chris,

The package should work with newer version of R. But currently as you mentioned, we are not updating it at the moment.

Best, Quanli

On Jul 22, 2021, at 4:21 PM, Christopher Park @. @.>> wrote:

For instance R 4.1.1.

I do understand that you may have to freeze development for such a large effort.

Thank you, Chris Park @. @.> — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/astrazeneca-cgr-publications/PEACOK/issues/1, or unsubscribe https://github.com/notifications/unsubscribe-auth/AB3RZTCMBCXD7LCRSALT2BLTZB4TTANCNFSM5A2W5QZQ.

parkcc commented 3 years ago

Hi Quanli,

Thanks for your response. Would you know how to install and run PEACOK on a newer version of R? I've installed all of the dependencies, tried installing directly from github using devtools, etc. with no luck. Is the best solution to downgrade to the older version? Does a dockerfile exist that has the appropriate version of R installed?

Thanks again for all of your help! Chris

QuanliWang commented 3 years ago

Hi Chris,

PEACOK is designed as an R package. You can download the source package from https://github.com/astrazeneca-cgr-publications/PEACOK/blob/master/versions/1.0.7/PEACOK_1.0.7.tar.gz https://github.com/astrazeneca-cgr-publications/PEACOK/blob/master/versions/1.0.7/PEACOK_1.0.7.tar.gz and then install it directly using the install.packages function from R.

Best, Quanli

On Jul 27, 2021, at 9:47 PM, Christopher Park @. @.>> wrote:

Hi Quanli,

Thanks for your response. Would you know how to install and run PEACOK on a newer version of R? I've installed all of the dependencies, tried installing directly from github using devtools, etc. with no luck. Is the best solution to downgrade to the older version? Does a dockerfile exist that has the appropriate version of R installed?

Thanks again for all of your help! Chris

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/astrazeneca-cgr-publications/PEACOK/issues/1#issuecomment-887946750, or unsubscribe https://github.com/notifications/unsubscribe-auth/AB3RZTBTCVHJS7K24TPSGWTTZ5OU5ANCNFSM5A2W5QZQ.