astrazeneca-cgr-publications / PEACOK

Phenome Exome Association and Correlation Of Key phenotypes
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erro in auto.update.variable.info #4

Open huangyuanf opened 2 years ago

huangyuanf commented 2 years ago

hello!I'm sorry to bother you! When I run auto.update.variable.info,I found such erro,how can I solve it? thank you!

updated_info = auto.update.variable.info(old_variable_info, UKB_data_dictionary) Warning message: In fread(UKB_data_dictionary_file, header = TRUE, data.table = FALSE) : Stopped early on line 737. Expected 17 fields but found 16. Consider fill=TRUE and comment.char=. First discarded non-empty line: < Physical measures > ECG during exercise 100012 6015 Chest pain felt during physical activity 96530 99501 Complete Categorical single Data Primary Unisex 2 1 100267 Exercise safety question 2, asked prior to fitness test \Do you feel pain in your chest when you do physical activity\,http://biobank.ndph.ox.ac.uk/ukb/field.cgi?id=6015>>

1emmy commented 1 year ago

hello!I'm sorry to bother you! When I run auto.update.variable.info,I found such erro,how can I solve it? thank you!

updated_info = auto.update.variable.info(old_variable_info, UKB_data_dictionary) Warning message: In fread(UKB_data_dictionary_file, header = TRUE, data.table = FALSE) : Stopped early on line 737. Expected 17 fields but found 16. Consider fill=TRUE and comment.char=. First discarded non-empty line: < Physical measures > ECG during exercise 100012 6015 Chest pain felt during physical activity 96530 99501 Complete Categorical single Data Primary Unisex 2 1 100267 Exercise safety question 2, asked prior to fitness test \Do you feel pain in your chest when you do physical activity,http://biobank.ndph.ox.ac.uk/ukb/field.cgi?id=6015>>

Hello, I also have a similar problem, may I ask how you adjust it? If possible, can I contact you by email to ask you some PEACOK questions? My email address isyangshuxian@tmu.edu.cn

huangyuanf commented 1 year ago

I update this file using Phesant, you can try it

------------------ 原始邮件 ------------------ 发件人: "astrazeneca-cgr-publications/PEACOK" @.>; 发送时间: 2023年2月28日(星期二) 晚上8:28 @.>; @.**@.>; 主题: Re: [astrazeneca-cgr-publications/PEACOK] erro in auto.update.variable.info (Issue #4)

hello!I'm sorry to bother you! When I run auto.update.variable.info,I found such erro,how can I solve it? thank you!

updated_info = auto.update.variable.info(old_variable_info, UKB_data_dictionary) Warning message: In fread(UKB_data_dictionary_file, header = TRUE, data.table = FALSE) : Stopped early on line 737. Expected 17 fields but found 16. Consider fill=TRUE and comment.char=. First discarded non-empty line: < Physical measures > ECG during exercise 100012 6015 Chest pain felt during physical activity 96530 99501 Complete Categorical single Data Primary Unisex 2 1 100267 Exercise safety question 2, asked prior to fitness test \Do you feel pain in your chest when you do physical activity,http://biobank.ndph.ox.ac.uk/ukb/field.cgi?id=6015&gt;&gt;

Hello, I also have a similar problem, may I ask how you adjust it? If possible, can I contact you by email to ask you some PEACOK questions? My email address @.***

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