search

astrazeneca-cgr-publications / mantis-ml-release-2.0

Mantis-ML 2.0
Mozilla Public License 2.0
9 stars 1 forks source link

403 Forbidden error #1

Closed Luowenjin826 closed 3 months ago

Luowenjin826 commented 4 months ago

Hey!I got the 403 Forbidden error after running mantisml2 -d "diabetes mellitus" -o mantisml_diabetes_out -m sgcn in ubuntu20.04: File "/home/luo_wenjin/mambaforge/envs/mantis_ml_2/lib/python3.8/site-packages/download/download.py", line 119, in download _fetch_file( File "/home/luo_wenjin/mambaforge/envs/mantis_ml_2/lib/python3.8/site-packages/download/download.py", line 277, in _fetch_file raise RuntimeError( RuntimeError: Error while fetching file https://ndownloader.figshare.com/files/12551759. Dataset fetching aborted. Error: HTTP Error 403: Forbidden

Then I run wget https://ndownloader.figshare.com/files/12551759: Connecting to ndownloader.figshare.com (ndownloader.figshare.com)|52.209.182.24|:443... connected. HTTP request sent, awaiting response... 403 Forbidden

But I successfully downloaded "https://ndownloader.figshare.com/files/12551759" in Firefox browser.

May I ask how to fix it? Thanks!

AZMiddleton commented 4 months ago

Sounds like a firewall issue (potentially!)

Have you tried the steps at the bottom of the README? Basically, the code expects the file downloaded from figshare to be placed at mantis_ml/data/bioword2vec_embeddings/bio_embedding_intrinsic (i.e. the name of the file is bio_embedding_intrinsic) and is placed in mantis_ml/data/bioword2vec_embeddings.

Hope this helps!

Luowenjin826 commented 3 months ago

It does work. Thank you!