compiling so3

[pwschuck]

Hi,

I'm trying to compile so3 and I get the following errors on 'make all' (seems like I'm missing an include file?). Any help would be greatly appreciated.

Thanks,

-- Pete

make all icc -Wall -O3 -fopenmp -DSO3_VERSION=\"0.1\" -DSO3_BUILD=\"svnversion -n .\" -I/data/software/sphwvlts//../fftw/fftw-3.3.4//include -I/data/software/sphwvlts//ssht/include/c -I/data/software/sphwvlts//so3/include/c -fPIC -c /data/software/sphwvlts//so3/src/c/so3_core.c -o /data/software/sphwvlts//so3/src/c/so3_core.o /data/software/sphwvlts//so3/src/c/so3_core.c(100): error: identifier "ssht_core_mw_lb_inverse_sov_sym" is undefined ssht = ssht_core_mw_lb_inverse_sov_sym; ^

/data/software/sphwvlts//so3/src/c/so3_core.c(104): error: identifier "ssht_core_mw_lb_inverse_sov_sym_ss" is undefined ssht = ssht_core_mw_lb_inverse_sov_sym_ss; ^

/data/software/sphwvlts//so3/src/c/so3_core.c(305): error: identifier "ssht_core_mw_lb_forward_sov_conv_sym" is undefined ssht = ssht_core_mw_lb_forward_sov_conv_sym; ^

/data/software/sphwvlts//so3/src/c/so3_core.c(309): error: identifier "ssht_core_mw_lb_forward_sov_conv_sym_ss" is undefined ssht = ssht_core_mw_lb_forward_sov_conv_sym_ss; ^

/data/software/sphwvlts//so3/src/c/so3_core.c(526): error: identifier "ssht_core_mw_lb_inverse_sov_sym" is undefined complex_ssht = ssht_core_mw_lb_inverse_sov_sym; ^

/data/software/sphwvlts//so3/src/c/so3_core.c(527): error: identifier "ssht_core_mw_lb_inverse_sov_sym_real" is undefined real_ssht = ssht_core_mw_lb_inverse_sov_sym_real; ^

/data/software/sphwvlts//so3/src/c/so3_core.c(531): error: identifier "ssht_core_mw_lb_inverse_sov_sym_ss" is undefined complex_ssht = ssht_core_mw_lb_inverse_sov_sym_ss; ^

/data/software/sphwvlts//so3/src/c/so3_core.c(532): error: identifier "ssht_core_mw_lb_inverse_sov_sym_ss_real" is undefined real_ssht = ssht_core_mw_lb_inverse_sov_sym_ss_real; ^

/data/software/sphwvlts//so3/src/c/so3_core.c(752): error: identifier "ssht_core_mw_lb_forward_sov_conv_sym" is undefined complex_ssht = ssht_core_mw_lb_forward_sov_conv_sym; ^

/data/software/sphwvlts//so3/src/c/so3_core.c(753): error: identifier "ssht_core_mw_lb_forward_sov_conv_sym_real" is undefined real_ssht = ssht_core_mw_lb_forward_sov_conv_sym_real; ^

/data/software/sphwvlts//so3/src/c/so3_core.c(757): error: identifier "ssht_core_mw_lb_forward_sov_conv_sym_ss" is undefined complex_ssht = ssht_core_mw_lb_forward_sov_conv_sym_ss; ^

/data/software/sphwvlts//so3/src/c/so3_core.c(758): error: identifier "ssht_core_mw_lb_forward_sov_conv_sym_ss_real" is undefined real_ssht = ssht_core_mw_lb_forward_sov_conv_sym_ss_real; ^

compilation aborted for /data/software/sphwvlts//so3/src/c/so3_core.c (code 2) make: *\ [/data/software/sphwvlts//so3/src/c/so3_core.o] Error 2

[ixkael]

Hi, I've never seem these errors before but I have never compile these codes with icc, which might have a different convention for function pointers. Would you mind trying to compile with gcc?

[pwschuck]

Hi Boris,

thanks for your quick reply

I rebuild ssht with gcc and no problem (same with icc)

after that build here is the output for so3

thanks,

-- Pete

make gcc -Wall -O3 -fopenmp -DSO3_VERSION=\"0.1\" -DSO3_BUILD=\"svnversion -n .\" -I/data/software/sphwvlts//../fftw/fftw-3.3.4//include -I/data/software/sphwvlts//ssht/include/c -I/data/software/sphwvlts//so3/include/c -fPIC -c /data/software/sphwvlts//so3/src/c/so3_core.c -o /data/software/sphwvlts//so3/src/c/so3_core.o /data/software/sphwvlts//so3/src/c/so3_core.c: In function ‘so3_core_inverse_via_ssht’: /data/software/sphwvlts//so3/src/c/so3_core.c:100:16: error: ‘ssht_core_mw_lb_inverse_sov_sym’ undeclared (first use in this function) ssht = ssht_core_mw_lb_inverse_sov_sym; ^ /data/software/sphwvlts//so3/src/c/so3_core.c:100:16: note: each undeclared identifier is reported only once for each function it appears in /data/software/sphwvlts//so3/src/c/so3_core.c:104:16: error: ‘ssht_core_mw_lb_inverse_sov_sym_ss’ undeclared (first use in this function) ssht = ssht_core_mw_lb_inverse_sov_sym_ss; ^ /data/software/sphwvlts//so3/src/c/so3_core.c: In function ‘so3_core_forward_via_ssht’: /data/software/sphwvlts//so3/src/c/so3_core.c:305:16: error: ‘ssht_core_mw_lb_forward_sov_conv_sym’ undeclared (first use in this function) ssht = ssht_core_mw_lb_forward_sov_conv_sym; ^ /data/software/sphwvlts//so3/src/c/so3_core.c:309:16: error: ‘ssht_core_mw_lb_forward_sov_conv_sym_ss’ undeclared (first use in this function) ssht = ssht_core_mw_lb_forward_sov_conv_sym_ss; ^ /data/software/sphwvlts//so3/src/c/so3_core.c: In function ‘so3_core_inverse_via_ssht_real’: /data/software/sphwvlts//so3/src/c/so3_core.c:526:24: error: ‘ssht_core_mw_lb_inverse_sov_sym’ undeclared (first use in this function) complex_ssht = ssht_core_mw_lb_inverse_sov_sym; ^ /data/software/sphwvlts//so3/src/c/so3_core.c:527:21: error: ‘ssht_core_mw_lb_inverse_sov_sym_real’ undeclared (first use in this function) real_ssht = ssht_core_mw_lb_inverse_sov_sym_real; ^ /data/software/sphwvlts//so3/src/c/so3_core.c:531:24: error: ‘ssht_core_mw_lb_inverse_sov_sym_ss’ undeclared (first use in this function) complex_ssht = ssht_core_mw_lb_inverse_sov_sym_ss; ^ /data/software/sphwvlts//so3/src/c/so3_core.c:532:21: error: ‘ssht_core_mw_lb_inverse_sov_sym_ss_real’ undeclared (first use in this function) real_ssht = ssht_core_mw_lb_inverse_sov_sym_ss_real; ^ /data/software/sphwvlts//so3/src/c/so3_core.c: In function ‘so3_core_forward_via_ssht_real’: /data/software/sphwvlts//so3/src/c/so3_core.c:752:24: error: ‘ssht_core_mw_lb_forward_sov_conv_sym’ undeclared (first use in this function) complex_ssht = ssht_core_mw_lb_forward_sov_conv_sym; ^ /data/software/sphwvlts//so3/src/c/so3_core.c:753:21: error: ‘ssht_core_mw_lb_forward_sov_conv_sym_real’ undeclared (first use in this function) real_ssht = ssht_core_mw_lb_forward_sov_conv_sym_real; ^ /data/software/sphwvlts//so3/src/c/so3_core.c:757:24: error: ‘ssht_core_mw_lb_forward_sov_conv_sym_ss’ undeclared (first use in this function) complex_ssht = ssht_core_mw_lb_forward_sov_conv_sym_ss; ^ /data/software/sphwvlts//so3/src/c/so3_core.c:758:21: error: ‘ssht_core_mw_lb_forward_sov_conv_sym_ss_real’ undeclared (first use in this function) real_ssht = ssht_core_mw_lb_forward_sov_conv_sym_ss_real; ^ make: *\ [/data/software/sphwvlts//so3/src/c/so3_core.o] Error 1

On 11/13/2015 08:38 AM, Boris Leistedt wrote:

Hi, I've never seem these errors before but I have never compile these codes with icc, which might have a different convention for function pointers. Would you mind trying to compile with gcc?

— Reply to this email directly or view it on GitHub https://github.com/astro-informatics/so3/issues/1#issuecomment-156433109.

Pete Schuck peter.schuck@nasa.gov Room 250, Building 21 Space Weather Laboratory, Code 674 Heliophysics Science Division NASA Goddard Space Flight Center 8800 Greenbelt Rd. Greenbelt, MD 20771

Work: (301) 286-3008 Cell: (240) 393-9607 fax: (301) 286-5348

---

Nullius in verba

For the materialist, science is what teaches us what to believe. For the empiricist, science is more nearly what teaches us how to give up our beliefs. --- Bas van Fraassen

Because the truth is important --- Jordan Schuck (Age 7)

[ixkael]

Thanks for trying with GCC. I'm afraid I cannot reproduce this error for some reason. Could you please let me know what OS and compiler versions you use? One way that (I think) could maybe fix this issue is to add "extern" declarations in so3_core.c. For example adding "extern void ssht_core_mw_lb_inverse_sov_sym ... ".

[pwschuck]

Thanks you for helping!

uname -a

Linux gs674-houdini 3.11.10-29-desktop #1 SMP PREEMPT Thu Mar 5 16:24:00 UTC 2015 (338c513) x86_64 x86_64 x86_64 GNU/Linux

more /etc/SUSE-brand openSUSE VERSION = 13.1

gcc -v Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib64/gcc/x86_64-suse-linux/4.8/lto-wrapper Target: x86_64-suse-linux Configured with: ../configure --prefix=/usr --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64 --enable-languages=c,c++,objc,fortran,obj-c++,java,ada --enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.8 --enable-ssp --disable-libssp --disable-plugin --with-bugurl=http://bugs.opensuse.org/ --with-pkgversion='SUSE Linux' --disable-libgcj --disable-libmudflap --with-slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit --enable-libstdcxx-allocator=new --disable-libstdcxx-pch --enable-version-specific-runtime-libs --enable-linker-build-id --program-suffix=-4.8 --enable-linux-futex --without-system-libunwind --with-arch-32=i586 --with-tune=generic --build=x86_64-suse-linux Thread model: posix gcc version 4.8.1 20130909 [gcc-4_8-branch revision 202388](SUSE Linux)

Thanks,

-- Pete

On 11/13/2015 09:38 AM, Boris Leistedt wrote:

Thanks for trying with GCC. I'm afraid I cannot reproduce this error for some reason. Could you please let me know what OS and compiler versions you use? One way that (I think) could maybe fix this issue is to add "extern" declarations in so3_core.c. For example adding "extern void ssht_core_mw_lb_inverse_sov_sym ... ".

— Reply to this email directly or view it on GitHub https://github.com/astro-informatics/so3/issues/1#issuecomment-156449748.

Pete Schuck peter.schuck@nasa.gov Room 250, Building 21 Space Weather Laboratory, Code 674 Heliophysics Science Division NASA Goddard Space Flight Center 8800 Greenbelt Rd. Greenbelt, MD 20771

Work: (301) 286-3008 Cell: (240) 393-9607 fax: (301) 286-5348

---

Nullius in verba

For the materialist, science is what teaches us what to believe. For the empiricist, science is more nearly what teaches us how to give up our beliefs. --- Bas van Fraassen

Because the truth is important --- Jordan Schuck (Age 7)

[pwschuck]

Hi Boris,

I'm not super comfortable with C so I'm not sure where to add your suggestion below. Presumably this could all be fixed with a header file of defs? Anyway, just as double check, I rebuild everything from scratch with gcc/gfortran on an independent computer (without intel installed). Same errors.

fftw - no issues ssht - no issues, test program runs so3 - same issues

gcc -Wall -O3 -fopenmp -DSO3_VERSION=\"0.1\" -DSO3_BUILD=\"git rev-parse HEAD\" -I/usr/local/fftw/fftw-3.3.4/include -I../ssht/include/c -I../so3/include/c -fPIC -c ../so3/src/c/so3_core.c -o ../so3/src/c/so3_core.o fatal: Not a git repository (or any parent up to mount point /home) Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). ../so3/src/c/so3_core.c: In function ‘so3_core_inverse_via_ssht’: ../so3/src/c/so3_core.c:100:16: error: ‘ssht_core_mw_lb_inverse_sov_sym’ undeclared (first use in this function) ssht = ssht_core_mw_lb_inverse_sov_sym; ^ ../so3/src/c/so3_core.c:100:16: note: each undeclared identifier is reported only once for each function it appears in ../so3/src/c/so3_core.c:104:16: error: ‘ssht_core_mw_lb_inverse_sov_sym_ss’ undeclared (first use in this function) ssht = ssht_core_mw_lb_inverse_sov_sym_ss; ^ ../so3/src/c/so3_core.c: In function ‘so3_core_forward_via_ssht’: ../so3/src/c/so3_core.c:305:16: error: ‘ssht_core_mw_lb_forward_sov_conv_sym’ undeclared (first use in this function) ssht = ssht_core_mw_lb_forward_sov_conv_sym; ^ ../so3/src/c/so3_core.c:309:16: error: ‘ssht_core_mw_lb_forward_sov_conv_sym_ss’ undeclared (first use in this function) ssht = ssht_core_mw_lb_forward_sov_conv_sym_ss; ^ ../so3/src/c/so3_core.c: In function ‘so3_core_inverse_via_ssht_real’: ../so3/src/c/so3_core.c:526:24: error: ‘ssht_core_mw_lb_inverse_sov_sym’ undeclared (first use in this function) complex_ssht = ssht_core_mw_lb_inverse_sov_sym; ^ ../so3/src/c/so3_core.c:527:21: error: ‘ssht_core_mw_lb_inverse_sov_sym_real’ undeclared (first use in this function) real_ssht = ssht_core_mw_lb_inverse_sov_sym_real; ^ ../so3/src/c/so3_core.c:531:24: error: ‘ssht_core_mw_lb_inverse_sov_sym_ss’ undeclared (first use in this function) complex_ssht = ssht_core_mw_lb_inverse_sov_sym_ss; ^ ../so3/src/c/so3_core.c:532:21: error: ‘ssht_core_mw_lb_inverse_sov_sym_ss_real’ undeclared (first use in this function) real_ssht = ssht_core_mw_lb_inverse_sov_sym_ss_real; ^ ../so3/src/c/so3_core.c: In function ‘so3_core_forward_via_ssht_real’: ../so3/src/c/so3_core.c:752:24: error: ‘ssht_core_mw_lb_forward_sov_conv_sym’ undeclared (first use in this function) complex_ssht = ssht_core_mw_lb_forward_sov_conv_sym; ^ ../so3/src/c/so3_core.c:753:21: error: ‘ssht_core_mw_lb_forward_sov_conv_sym_real’ undeclared (first use in this function) real_ssht = ssht_core_mw_lb_forward_sov_conv_sym_real; ^ ../so3/src/c/so3_core.c:757:24: error: ‘ssht_core_mw_lb_forward_sov_conv_sym_ss’ undeclared (first use in this function) complex_ssht = ssht_core_mw_lb_forward_sov_conv_sym_ss; ^ ../so3/src/c/so3_core.c:758:21: error: ‘ssht_core_mw_lb_forward_sov_conv_sym_ss_real’ undeclared (first use in this function) real_ssht = ssht_core_mw_lb_forward_sov_conv_sym_ss_real; ^ makefile:123: recipe for target '../so3/src/c/so3_core.o' failed make: *\ [../so3/src/c/so3_core.o] Error 1

also I cannot find any defs for ‘ssht_core_mw_lb_inverse_sov_sym’ (and other functions) in the ssht directory I obtained off of github through subversion

Thanks,

-- Pete

On 11/13/2015 09:38 AM, Boris Leistedt wrote:

Thanks for trying with GCC. I'm afraid I cannot reproduce this error for some reason. Could you please let me know what OS and compiler versions you use? One way that (I think) could maybe fix this issue is to add "extern" declarations in so3_core.c. For example adding "extern void ssht_core_mw_lb_inverse_sov_sym ... ".

— Reply to this email directly or view it on GitHub https://github.com/astro-informatics/so3/issues/1#issuecomment-156449748.

Pete Schuck peter.schuck@nasa.gov Room 250, Building 21 Space Weather Laboratory, Code 674 Heliophysics Science Division NASA Goddard Space Flight Center 8800 Greenbelt Rd. Greenbelt, MD 20771

Work: (301) 286-3008 Cell: (240) 393-9607 fax: (301) 286-5348

---

Nullius in verba

For the materialist, science is what teaches us what to believe. For the empiricist, science is more nearly what teaches us how to give up our beliefs. --- Bas van Fraassen

Because the truth is important --- Jordan Schuck (Age 7)

[ixkael]

Hi Pete,

OK I found the issue - this is actually a real problem so unrelated to your machine or install, sorry about the confusion and waste of time. The version of SSHT on github is not the latest for some reason. I will fix this as soon as possible so that you can pull the actual version needed by SO3.

Best, Boris

[pwschuck]

Thank you so much Boris! I suspected that this might be the problem after I searched the SSHT install for the missing functions with no positive results

-- Pete

On 11/16/2015 11:01 AM, Boris Leistedt wrote:

Hi Pete,

OK I found the issue - this is actually a real problem so unrelated to your machine or install, sorry about the confusion and waste of time. The version of SSHT on github is not the latest for some reason. I will fix this as soon as possible so that you can pull the actual version needed by SO3.

Best, Boris

— Reply to this email directly or view it on GitHub https://github.com/astro-informatics/so3/issues/1#issuecomment-157079404.

Pete Schuck peter.schuck@nasa.gov Room 250, Building 21 Space Weather Laboratory, Code 674 Heliophysics Science Division NASA Goddard Space Flight Center 8800 Greenbelt Rd. Greenbelt, MD 20771

Work: (301) 286-3008 Cell: (240) 393-9607 fax: (301) 286-5348

---

Nullius in verba

For the materialist, science is what teaches us what to believe. For the empiricist, science is more nearly what teaches us how to give up our beliefs. --- Bas van Fraassen

Because the truth is important --- Jordan Schuck (Age 7)

[ixkael]

Hi, Jason and I just fixed the problem and pushed a new version of SSHT to github. Could you please try to install SSHT + SO3 and see if this has resolved the problem? Thanks, Boris

[pwschuck]

Hi Boris & Jason,

That fixed it! I was able to build and run the test programs for ssht/so2/s2let

Thank you very much for your efforts.

-- Pete

On 11/18/2015 04:01 PM, Boris Leistedt wrote:

Hi, Jason and I just fixed the problem and pushed a new version of SSHT to github. Could you please try to install SSHT + SO3 and see if this has resolved the problem? Thanks, Boris

— Reply to this email directly or view it on GitHub https://github.com/astro-informatics/so3/issues/1#issuecomment-157862296.

Pete Schuck peter.schuck@nasa.gov Room 250, Building 21 Space Weather Laboratory, Code 674 Heliophysics Science Division NASA Goddard Space Flight Center 8800 Greenbelt Rd. Greenbelt, MD 20771

Work: (301) 286-3008 Cell: (240) 393-9607 fax: (301) 286-5348

---

Nullius in verba

For the materialist, science is what teaches us what to believe. For the empiricist, science is more nearly what teaches us how to give up our beliefs. --- Bas van Fraassen

Because the truth is important --- Jordan Schuck (Age 7)

[ixkael]

Brilliant! I'll close the issue then.

Boris